Wall clock time and date at job start Mon Mar 30 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47136 * 2 1 4 4 H 1.09002 * 109.46561 * 180.89938 * 3 2 1 5 5 C 1.50696 * 109.46918 * 300.89651 * 3 2 1 6 6 H 1.07995 * 120.00170 * 114.36950 * 5 3 2 7 7 C 1.37881 * 119.99891 * 294.36639 * 5 3 2 8 8 N 1.31511 * 120.00252 * 347.08530 * 7 5 3 9 9 Si 1.86799 * 119.99860 * 167.09225 * 7 5 3 10 10 H 1.48504 * 109.47270 * 59.99587 * 9 7 5 11 11 H 1.48495 * 109.47278 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47088 * 299.99952 * 9 7 5 13 13 S 1.80997 * 109.47121 * 60.89759 * 3 2 1 14 14 C 1.76203 * 100.00069 * 69.49437 * 13 3 2 15 15 N 1.31542 * 126.45293 * 5.24188 * 14 13 3 16 16 N 1.28413 * 110.50005 * 179.97438 * 15 14 13 17 17 N 1.28903 * 110.34253 * 0.02562 * 16 15 14 18 18 N 1.35394 * 126.45345 * 184.93101 * 14 13 3 19 19 C 1.46502 * 127.38421 * 359.97438 * 18 14 13 20 20 H 1.08998 * 109.47198 * 304.92573 * 1 2 3 21 21 H 1.09002 * 109.47374 * 64.92047 * 1 2 3 22 22 H 1.08993 * 109.47533 * 184.92688 * 1 2 3 23 23 H 1.09000 * 109.46962 * 240.00016 * 2 1 3 24 24 H 1.09001 * 109.47053 * 119.99961 * 2 1 3 25 25 H 0.97004 * 119.99598 * 1.77071 * 8 7 5 26 26 H 1.09001 * 109.46811 * 90.00000 * 19 18 14 27 27 H 1.08990 * 109.47383 * 209.99993 * 19 18 14 28 28 H 1.09001 * 109.47141 * 330.00677 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4425 -0.0161 5 6 1.5196 2.1593 -1.2192 6 1 0.8274 2.9808 -1.1082 7 6 1.9272 1.7662 -2.4763 8 7 2.9490 0.9493 -2.6109 9 14 1.0282 2.3943 -3.9885 10 1 1.1087 3.8765 -4.0323 11 1 1.6564 1.8277 -5.2089 12 1 -0.3958 1.9776 -3.9265 13 16 1.4586 2.2880 1.4910 14 6 2.4153 1.4501 2.7106 15 7 3.3543 0.5561 2.4890 16 7 3.8533 0.1436 3.5979 17 7 3.2815 0.7311 4.5927 18 7 2.3263 1.6096 4.0522 19 6 1.4259 2.5041 4.7839 20 1 -0.3633 0.5883 0.8426 21 1 -0.3634 0.4356 -0.9308 22 1 -0.3634 -1.0238 0.0883 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.3997 0.6029 -1.8248 26 1 0.4962 1.9808 5.0070 27 1 1.9001 2.8152 5.7146 28 1 1.2114 3.3819 4.1743 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036679177.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:57 Heat of formation + Delta-G solvation = 100.830356 kcal Electronic energy + Delta-G solvation = -13852.350427 eV Core-core repulsion = 11453.107074 eV Total energy + Delta-G solvation = -2399.243352 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.074 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.45570 -35.37919 -34.82842 -31.92298 -31.35554 -28.10941 -26.96336 -24.15599 -22.98139 -22.66701 -20.42118 -18.07602 -16.74175 -16.43713 -16.17233 -14.64259 -13.96479 -13.85468 -13.71024 -13.53665 -13.24982 -12.73793 -11.99911 -11.82523 -11.44845 -11.07843 -10.91412 -10.75511 -10.59146 -10.34879 -10.27226 -10.19434 -9.98414 -9.43539 -8.95308 -8.47135 -7.34105 -6.61039 -4.35326 1.21406 1.35652 2.41928 2.61572 3.00788 3.33693 3.35649 3.54399 4.35960 4.40853 4.94710 5.10817 5.13496 5.21647 5.64395 5.69808 5.99883 6.18279 6.21758 6.26403 6.73007 6.79541 6.91815 7.14610 7.24302 7.66971 8.11295 8.54311 8.78449 9.33242 10.77161 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.045409 B = 0.008042 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.469005 B = 3480.991685 C = 3658.271434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.080 3.920 4 H 0.061 0.939 5 C -0.600 4.600 6 H 0.062 0.938 7 C 0.041 3.959 8 N -0.890 5.890 9 Si 1.070 2.930 10 H -0.285 1.285 11 H -0.280 1.280 12 H -0.284 1.284 13 S -0.002 6.002 14 C 0.227 3.773 15 N -0.331 5.331 16 N -0.040 5.040 17 N -0.108 5.108 18 N -0.381 5.381 19 C 0.093 3.907 20 H 0.048 0.952 21 H 0.065 0.935 22 H 0.031 0.969 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.276 0.724 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 3.539 9.206 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C -0.048 4.048 4 H 0.079 0.921 5 C -0.640 4.640 6 H 0.080 0.920 7 C -0.168 4.168 8 N -0.523 5.523 9 Si 0.897 3.103 10 H -0.212 1.212 11 H -0.205 1.205 12 H -0.210 1.210 13 S 0.227 5.773 14 C -0.156 4.156 15 N -0.189 5.189 16 N -0.036 5.036 17 N -0.096 5.096 18 N -0.181 5.181 19 C -0.049 4.049 20 H 0.067 0.933 21 H 0.084 0.916 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.687 3.447 8.155 10.522 hybrid contribution 0.215 -0.214 1.692 1.719 sum -5.472 3.233 9.847 11.720 Atomic orbital electron populations 1.21714 0.96305 0.98996 1.02499 1.21757 0.96091 0.96840 1.00938 1.21389 0.99956 0.94346 0.89118 0.92118 1.21301 1.32498 1.20376 0.89785 0.92035 1.25817 0.95137 0.95451 1.00428 1.70771 1.16710 1.30352 1.34500 0.83528 0.75599 0.75992 0.75225 1.21170 1.20509 1.20994 1.85694 1.47524 1.45693 0.98409 1.28444 0.99361 0.98841 0.88934 1.75041 1.10917 1.13904 1.18994 1.77800 1.16748 1.15874 0.93142 1.82310 1.03071 1.05167 1.19034 1.51416 1.29934 1.32289 1.04433 1.22098 0.92293 0.92562 0.97964 0.93289 0.91572 0.95019 0.90735 0.94149 0.91218 0.89346 0.88292 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.42 37.16 0.35 -2.39 15 2 C -0.12 -2.60 5.31 -26.73 -0.14 -2.74 15 3 C 0.08 1.88 1.58 -27.88 -0.04 1.83 15 4 H 0.06 1.58 7.19 -51.91 -0.37 1.21 15 5 C -0.60 -15.04 7.27 -34.44 -0.25 -15.29 15 6 H 0.06 1.53 7.75 -52.49 -0.41 1.12 15 7 C 0.04 1.06 5.16 -17.82 -0.09 0.96 15 8 N -0.89 -24.83 13.06 55.43 0.72 -24.11 15 9 Si 1.07 23.06 29.92 -169.99 -5.09 17.97 15 10 H -0.29 -5.90 7.11 56.52 0.40 -5.50 15 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 13 S 0.00 -0.03 19.62 -107.50 -2.11 -2.14 15 14 C 0.23 4.39 7.78 -89.18 -0.69 3.70 15 15 N -0.33 -7.23 10.26 30.50 0.31 -6.91 15 16 N -0.04 -0.83 13.38 60.35 0.81 -0.02 15 17 N -0.11 -2.01 13.93 60.35 0.84 -1.17 15 18 N -0.38 -6.25 4.09 -68.10 -0.28 -6.53 15 19 C 0.09 0.95 11.40 59.85 0.68 1.63 15 20 H 0.05 0.91 6.78 -51.93 -0.35 0.56 15 21 H 0.07 1.39 7.38 -51.93 -0.38 1.01 15 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.07 1.82 6.71 -51.93 -0.35 1.47 15 24 H 0.04 0.90 6.59 -51.93 -0.34 0.55 15 25 H 0.28 7.80 6.28 -40.82 -0.26 7.54 15 26 H 0.09 0.74 8.14 -51.93 -0.42 0.31 15 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 15 28 H 0.10 0.89 7.85 -51.93 -0.41 0.48 15 LS Contribution 254.42 15.07 3.83 3.83 Total: -1.00 -29.19 254.42 -4.08 -33.27 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -2.93 Total: -1.90 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -0.19 Total: -12.30 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 2.41 Total: -38.74 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.09 Total: 17.97 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.11 Total: -2.14 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.19 -4.08 -33.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679177.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.100 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds