Wall clock time and date at job start Mon Mar 30 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47136 * 2 1 4 4 H 1.09002 * 109.46561 * 180.89938 * 3 2 1 5 5 C 1.50696 * 109.46918 * 300.89651 * 3 2 1 6 6 H 1.07995 * 120.00170 * 114.36950 * 5 3 2 7 7 C 1.37881 * 119.99891 * 294.36639 * 5 3 2 8 8 N 1.31511 * 120.00252 * 347.08530 * 7 5 3 9 9 Si 1.86799 * 119.99860 * 167.09225 * 7 5 3 10 10 H 1.48504 * 109.47270 * 59.99587 * 9 7 5 11 11 H 1.48495 * 109.47278 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47088 * 299.99952 * 9 7 5 13 13 S 1.80997 * 109.47121 * 60.89759 * 3 2 1 14 14 C 1.76203 * 100.00069 * 69.49437 * 13 3 2 15 15 N 1.31542 * 126.45293 * 5.24188 * 14 13 3 16 16 N 1.28413 * 110.50005 * 179.97438 * 15 14 13 17 17 N 1.28903 * 110.34253 * 0.02562 * 16 15 14 18 18 N 1.35394 * 126.45345 * 184.93101 * 14 13 3 19 19 C 1.46502 * 127.38421 * 359.97438 * 18 14 13 20 20 H 1.08998 * 109.47198 * 304.92573 * 1 2 3 21 21 H 1.09002 * 109.47374 * 64.92047 * 1 2 3 22 22 H 1.08993 * 109.47533 * 184.92688 * 1 2 3 23 23 H 1.09000 * 109.46962 * 240.00016 * 2 1 3 24 24 H 1.09001 * 109.47053 * 119.99961 * 2 1 3 25 25 H 0.97004 * 119.99598 * 1.77071 * 8 7 5 26 26 H 1.09001 * 109.46811 * 90.00000 * 19 18 14 27 27 H 1.08990 * 109.47383 * 209.99993 * 19 18 14 28 28 H 1.09001 * 109.47141 * 330.00677 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4425 -0.0161 5 6 1.5196 2.1593 -1.2192 6 1 0.8274 2.9808 -1.1082 7 6 1.9272 1.7662 -2.4763 8 7 2.9490 0.9493 -2.6109 9 14 1.0282 2.3943 -3.9885 10 1 1.1087 3.8765 -4.0323 11 1 1.6564 1.8277 -5.2089 12 1 -0.3958 1.9776 -3.9265 13 16 1.4586 2.2880 1.4910 14 6 2.4153 1.4501 2.7106 15 7 3.3543 0.5561 2.4890 16 7 3.8533 0.1436 3.5979 17 7 3.2815 0.7311 4.5927 18 7 2.3263 1.6096 4.0522 19 6 1.4259 2.5041 4.7839 20 1 -0.3633 0.5883 0.8426 21 1 -0.3634 0.4356 -0.9308 22 1 -0.3634 -1.0238 0.0883 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.3997 0.6029 -1.8248 26 1 0.4962 1.9808 5.0070 27 1 1.9001 2.8152 5.7146 28 1 1.2114 3.3819 4.1743 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036679177.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:56 Heat of formation + Delta-G solvation = 82.225080 kcal Electronic energy + Delta-G solvation = -13853.157212 eV Core-core repulsion = 11453.107074 eV Total energy + Delta-G solvation = -2400.050138 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.074 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.95010 -37.20894 -36.15883 -33.61671 -33.07719 -29.23458 -28.78242 -25.97141 -24.48248 -24.12699 -22.23322 -19.66148 -18.37364 -17.85517 -17.68418 -16.43759 -15.65239 -15.39654 -15.09976 -14.97047 -14.68282 -14.17581 -13.60521 -13.19658 -13.16655 -12.77628 -12.57496 -12.29142 -12.13969 -11.97703 -11.92144 -11.82485 -11.47848 -11.17769 -10.83769 -10.43259 -8.88268 -8.66172 -6.40317 -0.24148 -0.15520 1.04779 1.13282 1.30981 1.60975 1.66920 1.85881 2.58606 3.15773 3.19168 3.76434 4.15374 4.23031 4.27616 4.41052 4.45785 4.49860 4.54223 4.98329 5.02768 5.07352 5.14079 5.36334 5.53901 5.76239 6.09430 6.46762 7.27041 7.36899 8.71673 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.045409 B = 0.008042 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.469005 B = 3480.991685 C = 3658.271434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C 0.066 3.934 4 H 0.023 0.977 5 C -0.598 4.598 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.921 5.921 9 Si 1.111 2.889 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.264 1.264 13 S 0.057 5.943 14 C 0.210 3.790 15 N -0.365 5.365 16 N -0.065 5.065 17 N -0.100 5.100 18 N -0.360 5.360 19 C 0.074 3.926 20 H 0.065 0.935 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.037 0.963 25 H 0.261 0.739 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 4.857 10.468 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.147 4.147 3 C -0.063 4.063 4 H 0.041 0.959 5 C -0.638 4.638 6 H 0.084 0.916 7 C -0.208 4.208 8 N -0.556 5.556 9 Si 0.933 3.067 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.189 1.189 13 S 0.285 5.715 14 C -0.174 4.174 15 N -0.223 5.223 16 N -0.061 5.061 17 N -0.088 5.088 18 N -0.161 5.161 19 C -0.066 4.066 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.134 0.866 27 H 0.145 0.855 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.786 4.790 9.461 13.156 hybrid contribution 0.846 -0.565 1.500 1.813 sum -6.940 4.224 10.961 13.644 Atomic orbital electron populations 1.21654 0.94043 1.00582 1.02518 1.21619 0.97898 0.95916 0.99315 1.21169 0.97930 0.95540 0.91706 0.95895 1.21538 1.31720 1.20007 0.90538 0.91569 1.27126 0.94941 0.94988 1.03717 1.70891 1.18492 1.32463 1.33719 0.83012 0.75472 0.76443 0.71821 1.19357 1.21554 1.18867 1.85143 1.46498 1.44473 0.95376 1.28374 0.99601 0.99165 0.90252 1.74957 1.12100 1.15144 1.20092 1.77791 1.17928 1.17163 0.93242 1.82192 1.02968 1.04936 1.18725 1.51781 1.29212 1.31514 1.03598 1.22772 0.92524 0.92372 0.98888 0.91644 0.92723 0.93018 0.93736 0.94456 0.92896 0.86636 0.85482 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 9.42 71.98 0.68 -4.34 15 2 C -0.11 -4.86 5.31 30.60 0.16 -4.70 15 3 C 0.07 3.10 1.58 29.85 0.05 3.15 15 4 H 0.02 1.25 7.19 -2.39 -0.02 1.23 15 5 C -0.60 -29.91 7.27 25.60 0.19 -29.73 15 6 H 0.07 3.19 7.75 -2.91 -0.02 3.17 15 7 C -0.01 -0.27 5.16 84.66 0.44 0.17 15 8 N -0.92 -53.01 13.06 21.45 0.28 -52.73 15 9 Si 1.11 45.82 29.92 68.60 2.05 47.87 15 10 H -0.27 -10.26 7.11 99.48 0.71 -9.56 15 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 15 12 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 13 S 0.06 2.08 19.62 -56.49 -1.11 0.97 15 14 C 0.21 7.83 7.78 179.84 1.40 9.23 15 15 N -0.37 -15.99 10.26 -57.41 -0.59 -16.58 15 16 N -0.07 -2.72 13.38 37.02 0.50 -2.23 15 17 N -0.10 -3.55 13.93 37.02 0.52 -3.04 15 18 N -0.36 -10.92 4.09 -369.37 -1.51 -12.44 15 19 C 0.07 1.20 11.40 127.77 1.46 2.65 15 20 H 0.06 2.27 6.78 -2.39 -0.02 2.26 15 21 H 0.05 2.22 7.38 -2.39 -0.02 2.20 15 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 23 H 0.04 2.26 6.71 -2.39 -0.02 2.24 15 24 H 0.04 1.68 6.59 -2.39 -0.02 1.67 15 25 H 0.26 15.51 6.28 -92.71 -0.58 14.93 15 26 H 0.12 1.37 8.14 -2.39 -0.02 1.35 15 27 H 0.13 1.43 8.14 -2.39 -0.02 1.41 15 28 H 0.12 1.57 7.85 -2.39 -0.02 1.55 15 Total: -1.00 -64.30 254.42 5.86 -58.44 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 1.36 Total: 3.29 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.37 Total: -23.56 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -0.81 Total: -87.01 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.05 Total: 47.87 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.11 Total: 0.97 kcal Total: -64.30 5.86 -58.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679177.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.665 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds