Wall clock time and date at job start Mon Mar 30 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46980 * 2 1 4 4 C 1.50699 * 109.47103 * 119.99282 * 2 1 3 5 5 H 1.08004 * 119.99936 * 119.99987 * 4 2 1 6 6 C 1.37875 * 120.00346 * 300.00402 * 4 2 1 7 7 N 1.31515 * 120.00301 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99824 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47157 * 90.00160 * 8 6 4 10 10 H 1.48501 * 109.46988 * 210.00081 * 8 6 4 11 11 H 1.48499 * 109.46864 * 329.99888 * 8 6 4 12 12 O 1.42902 * 109.47453 * 239.99661 * 2 1 3 13 13 C 1.35994 * 116.99798 * 84.87127 * 12 2 1 14 14 C 1.38644 * 120.04217 * 354.57623 * 13 12 2 15 15 C 1.38183 * 119.99213 * 180.25780 * 14 13 12 16 16 C 1.38453 * 120.07352 * 359.44761 * 15 14 13 17 17 F 1.35102 * 119.96486 * 180.27948 * 16 15 14 18 18 C 1.38441 * 120.07594 * 0.55339 * 16 15 14 19 19 C 1.38343 * 120.00052 * 359.72683 * 18 16 15 20 20 F 1.35099 * 120.02785 * 179.97438 * 19 18 16 21 21 H 1.09000 * 109.47347 * 300.00330 * 1 2 3 22 22 H 1.09006 * 109.46745 * 60.00279 * 1 2 3 23 23 H 1.09003 * 109.46980 * 180.02562 * 1 2 3 24 24 H 0.96999 * 119.99995 * 179.97438 * 7 6 4 25 25 H 1.08002 * 119.99927 * 359.97438 * 14 13 12 26 26 H 1.08008 * 119.96198 * 179.72628 * 15 14 13 27 27 H 1.07999 * 120.00101 * 179.74630 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8593 3.5566 8 14 0.6258 1.2800 2.6540 9 1 -0.8021 0.8747 2.6992 10 1 0.9771 1.9957 3.9069 11 1 0.8491 2.1774 1.4921 12 8 2.0064 -0.6737 -1.1667 13 6 2.1101 0.0624 -2.3055 14 6 1.6559 1.3720 -2.3293 15 6 1.7569 2.1173 -3.4885 16 6 2.3218 1.5613 -4.6237 17 9 2.4246 2.2938 -5.7543 18 6 2.7763 0.2538 -4.6034 19 6 2.6715 -0.4970 -3.4462 20 9 3.1144 -1.7732 -3.4258 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.9031 -0.5276 4.4376 25 1 1.2190 1.8082 -1.4431 26 1 1.3988 3.1361 -3.5078 27 1 3.2131 -0.1800 -5.4908 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041207449.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:49 Heat of formation + Delta-G solvation = -98.922425 kcal Electronic energy + Delta-G solvation = -15465.646881 eV Core-core repulsion = 12439.315709 eV Total energy + Delta-G solvation = -3026.331172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.81826 -48.57352 -39.64452 -37.00965 -33.37670 -31.08651 -30.57513 -28.90541 -25.37628 -23.56496 -22.48556 -20.85403 -18.32880 -17.40818 -17.12796 -16.51981 -15.89238 -15.52830 -15.25768 -15.08942 -14.50059 -14.27396 -14.11340 -13.52114 -12.82482 -12.45562 -12.36584 -12.27166 -11.87826 -11.57369 -11.17212 -10.93088 -10.45601 -10.20382 -9.84228 -9.31346 -8.96060 -8.81770 -7.75800 -6.31476 -4.34841 1.07056 1.24609 3.07906 3.13045 3.20965 3.52245 3.72086 4.11587 4.14343 4.54520 4.74584 4.92477 4.97103 5.20244 5.55147 5.86942 5.88266 6.03301 6.08620 6.14638 6.20614 6.21550 6.36868 6.79551 6.95984 7.31841 7.80261 8.36661 8.77736 9.23871 10.80876 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.039433 B = 0.007717 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.897204 B = 3627.441410 C = 4138.996268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.183 3.817 3 H 0.035 0.965 4 C -0.524 4.524 5 H 0.088 0.912 6 C 0.080 3.920 7 N -0.885 5.885 8 Si 0.883 3.117 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.267 1.267 12 O -0.285 6.285 13 C 0.116 3.884 14 C -0.166 4.166 15 C -0.119 4.119 16 C 0.066 3.934 17 F -0.141 7.141 18 C -0.152 4.152 19 C 0.082 3.918 20 F -0.126 7.126 21 H 0.057 0.943 22 H 0.039 0.961 23 H 0.068 0.932 24 H 0.270 0.730 25 H 0.151 0.849 26 H 0.140 0.860 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.000 6.031 -12.920 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.128 3.872 3 H 0.053 0.947 4 C -0.562 4.562 5 H 0.106 0.894 6 C -0.124 4.124 7 N -0.521 5.521 8 Si 0.713 3.287 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.192 1.192 12 O -0.197 6.197 13 C 0.067 3.933 14 C -0.184 4.184 15 C -0.138 4.138 16 C 0.047 3.953 17 F -0.120 7.120 18 C -0.172 4.172 19 C 0.062 3.938 20 F -0.104 7.104 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.169 0.831 26 H 0.157 0.843 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.930 5.779 -12.675 14.063 hybrid contribution -0.615 0.867 0.134 1.071 sum -2.544 6.646 -12.541 14.420 Atomic orbital electron populations 1.22733 0.98783 1.02659 0.99784 1.20740 0.90554 0.93996 0.81938 0.94724 1.20714 1.33449 1.15059 0.86974 0.89361 1.24756 0.95631 0.96774 0.95212 1.69832 1.44436 1.39803 0.98064 0.86927 0.80866 0.83289 0.77667 1.19908 1.21576 1.19202 1.86311 1.79372 1.37994 1.16046 1.19301 0.94694 0.91150 0.88142 1.21230 1.04279 0.93293 0.99640 1.20959 1.00342 1.01057 0.91404 1.17046 1.05048 0.89811 0.83406 1.91476 1.94642 1.76702 1.49146 1.20768 1.04484 0.93580 0.98348 1.16585 1.03510 0.80922 0.92783 1.91516 1.87152 1.34863 1.96884 0.92479 0.94215 0.91308 0.91928 0.83125 0.84264 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.65 37.16 0.32 -3.43 15 2 C 0.18 4.22 1.81 -27.88 -0.05 4.17 15 3 H 0.04 0.78 5.37 -51.93 -0.28 0.50 15 4 C -0.52 -14.53 9.47 -34.44 -0.33 -14.85 15 5 H 0.09 2.72 8.06 -52.48 -0.42 2.29 15 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 15 7 N -0.88 -25.96 13.96 55.43 0.77 -25.18 15 8 Si 0.88 20.20 24.37 -169.99 -4.14 16.06 15 9 H -0.27 -6.02 6.87 56.52 0.39 -5.63 15 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 11 H -0.27 -5.65 6.53 56.52 0.37 -5.28 15 12 O -0.29 -6.41 9.65 -19.72 -0.19 -6.60 15 13 C 0.12 2.17 6.60 -39.19 -0.26 1.91 15 14 C -0.17 -2.64 8.24 -39.45 -0.33 -2.97 15 15 C -0.12 -1.59 10.02 -39.52 -0.40 -1.99 15 16 C 0.07 0.91 7.30 -39.43 -0.29 0.62 15 17 F -0.14 -1.86 17.27 2.25 0.04 -1.82 15 18 C -0.15 -2.12 10.00 -39.47 -0.39 -2.52 15 19 C 0.08 1.39 7.31 -39.30 -0.29 1.11 15 20 F -0.13 -2.27 17.11 2.25 0.04 -2.24 15 21 H 0.06 1.19 3.27 -51.93 -0.17 1.02 15 22 H 0.04 0.69 6.90 -51.93 -0.36 0.33 15 23 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 25 H 0.15 2.37 5.42 -52.49 -0.28 2.09 15 26 H 0.14 1.49 8.06 -52.48 -0.42 1.07 15 27 H 0.15 1.69 8.06 -52.49 -0.42 1.26 15 LS Contribution 239.30 15.07 3.61 3.61 Total: -1.00 -28.64 239.30 -3.94 -32.58 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -1.96 Total: -0.55 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.10 Total: -15.85 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.77 Total: -25.18 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.19 Total: -6.60 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.08 Total: -4.06 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.14 Total: 16.06 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.64 -3.94 -32.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041207449.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.341 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds