Wall clock time and date at job start Mon Mar 30 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46980 * 2 1 4 4 C 1.50699 * 109.47103 * 119.99282 * 2 1 3 5 5 H 1.08004 * 119.99936 * 119.99987 * 4 2 1 6 6 C 1.37875 * 120.00346 * 300.00402 * 4 2 1 7 7 N 1.31515 * 120.00301 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99824 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47157 * 90.00160 * 8 6 4 10 10 H 1.48501 * 109.46988 * 210.00081 * 8 6 4 11 11 H 1.48499 * 109.46864 * 329.99888 * 8 6 4 12 12 O 1.42902 * 109.47453 * 239.99661 * 2 1 3 13 13 C 1.35994 * 116.99798 * 84.87127 * 12 2 1 14 14 C 1.38644 * 120.04217 * 354.57623 * 13 12 2 15 15 C 1.38183 * 119.99213 * 180.25780 * 14 13 12 16 16 C 1.38453 * 120.07352 * 359.44761 * 15 14 13 17 17 F 1.35102 * 119.96486 * 180.27948 * 16 15 14 18 18 C 1.38441 * 120.07594 * 0.55339 * 16 15 14 19 19 C 1.38343 * 120.00052 * 359.72683 * 18 16 15 20 20 F 1.35099 * 120.02785 * 179.97438 * 19 18 16 21 21 H 1.09000 * 109.47347 * 300.00330 * 1 2 3 22 22 H 1.09006 * 109.46745 * 60.00279 * 1 2 3 23 23 H 1.09003 * 109.46980 * 180.02562 * 1 2 3 24 24 H 0.96999 * 119.99995 * 179.97438 * 7 6 4 25 25 H 1.08002 * 119.99927 * 359.97438 * 14 13 12 26 26 H 1.08008 * 119.96198 * 179.72628 * 15 14 13 27 27 H 1.07999 * 120.00101 * 179.74630 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8593 3.5566 8 14 0.6258 1.2800 2.6540 9 1 -0.8021 0.8747 2.6992 10 1 0.9771 1.9957 3.9069 11 1 0.8491 2.1774 1.4921 12 8 2.0064 -0.6737 -1.1667 13 6 2.1101 0.0624 -2.3055 14 6 1.6559 1.3720 -2.3293 15 6 1.7569 2.1173 -3.4885 16 6 2.3218 1.5613 -4.6237 17 9 2.4246 2.2938 -5.7543 18 6 2.7763 0.2538 -4.6034 19 6 2.6715 -0.4970 -3.4462 20 9 3.1144 -1.7732 -3.4258 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.9031 -0.5276 4.4376 25 1 1.2190 1.8082 -1.4431 26 1 1.3988 3.1361 -3.5078 27 1 3.2131 -0.1800 -5.4908 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041207449.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:49 Heat of formation + Delta-G solvation = -117.231575 kcal Electronic energy + Delta-G solvation = -15466.440825 eV Core-core repulsion = 12439.315709 eV Total energy + Delta-G solvation = -3027.125116 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.92478 -49.89457 -41.06006 -38.39394 -35.32236 -32.80782 -31.86693 -30.20541 -27.32005 -24.90669 -23.76945 -22.45107 -19.73079 -18.90575 -18.62946 -18.14105 -17.18967 -16.95305 -16.65802 -16.33606 -15.92229 -15.70782 -15.40619 -15.02639 -14.60750 -14.00910 -13.94703 -13.63426 -13.21416 -13.01954 -12.81609 -12.42008 -12.14782 -11.77712 -11.54145 -11.24707 -10.84545 -10.13920 -9.09848 -8.42123 -6.53341 -0.09353 0.02426 1.28675 1.33869 1.45349 2.22726 2.25199 2.35531 2.90059 2.90699 3.34465 3.60105 3.85312 3.97922 4.22308 4.32614 4.44122 4.57138 4.72057 4.75666 4.87236 4.97860 5.01829 5.32139 5.40122 5.60065 5.95185 6.50167 6.63138 7.11216 8.74903 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.039433 B = 0.007717 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.897204 B = 3627.441410 C = 4138.996268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.187 3.813 3 H 0.049 0.951 4 C -0.546 4.546 5 H 0.030 0.970 6 C 0.022 3.978 7 N -0.938 5.938 8 Si 0.952 3.048 9 H -0.255 1.255 10 H -0.289 1.289 11 H -0.231 1.231 12 O -0.320 6.320 13 C 0.080 3.920 14 C -0.164 4.164 15 C -0.102 4.102 16 C 0.078 3.922 17 F -0.132 7.132 18 C -0.139 4.139 19 C 0.062 3.938 20 F -0.141 7.141 21 H 0.059 0.941 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.275 0.725 25 H 0.157 0.843 26 H 0.177 0.823 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 9.174 -14.931 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.583 4.583 5 H 0.048 0.952 6 C -0.177 4.177 7 N -0.577 5.577 8 Si 0.775 3.225 9 H -0.180 1.180 10 H -0.216 1.216 11 H -0.154 1.154 12 O -0.234 6.234 13 C 0.033 3.967 14 C -0.183 4.183 15 C -0.120 4.120 16 C 0.058 3.942 17 F -0.111 7.111 18 C -0.159 4.159 19 C 0.042 3.958 20 F -0.120 7.120 21 H 0.078 0.922 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.175 0.825 26 H 0.194 0.806 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.434 8.920 -14.734 17.562 hybrid contribution -0.027 -0.158 0.609 0.630 sum -3.461 8.761 -14.125 16.978 Atomic orbital electron populations 1.22617 0.96494 1.02633 1.01618 1.20502 0.92107 0.93523 0.80628 0.93384 1.20976 1.33291 1.13965 0.90114 0.95195 1.25793 0.97013 1.00679 0.94232 1.70004 1.46414 1.42303 0.98940 0.85821 0.79087 0.78770 0.78781 1.18014 1.21609 1.15438 1.86224 1.80737 1.39364 1.17101 1.19654 0.97216 0.92571 0.87285 1.21309 1.04018 0.92119 1.00845 1.21279 0.98545 1.02225 0.89958 1.17103 1.03922 0.89493 0.83684 1.91513 1.94456 1.76389 1.48746 1.20976 1.03349 0.93551 0.97982 1.16889 1.04472 0.80820 0.93571 1.91472 1.87511 1.35999 1.97011 0.92241 0.90444 0.92495 0.91616 0.82514 0.80569 0.80814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.90 8.65 71.98 0.62 -6.28 15 2 C 0.19 8.63 1.81 29.85 0.05 8.68 15 3 H 0.05 2.06 5.37 -2.39 -0.01 2.05 15 4 C -0.55 -31.62 9.47 25.60 0.24 -31.38 15 5 H 0.03 2.00 8.06 -2.91 -0.02 1.97 15 6 C 0.02 1.22 5.45 84.65 0.46 1.68 15 7 N -0.94 -57.29 13.96 21.45 0.30 -56.99 15 8 Si 0.95 40.51 24.37 68.60 1.67 42.18 15 9 H -0.25 -10.11 6.87 99.48 0.68 -9.42 15 10 H -0.29 -12.25 7.11 99.48 0.71 -11.54 15 11 H -0.23 -8.48 6.53 99.48 0.65 -7.83 15 12 O -0.32 -14.74 9.65 -93.48 -0.90 -15.64 15 13 C 0.08 2.92 6.60 22.52 0.15 3.07 15 14 C -0.16 -4.72 8.24 22.35 0.18 -4.53 15 15 C -0.10 -2.25 10.02 22.31 0.22 -2.03 15 16 C 0.08 1.79 7.30 22.37 0.16 1.96 15 17 F -0.13 -2.88 17.27 44.97 0.78 -2.11 15 18 C -0.14 -3.50 10.00 22.34 0.22 -3.28 15 19 C 0.06 2.07 7.31 22.45 0.16 2.23 15 20 F -0.14 -5.21 17.11 44.97 0.77 -4.44 15 21 H 0.06 2.27 3.27 -2.39 -0.01 2.27 15 22 H 0.08 2.41 6.90 -2.38 -0.02 2.40 15 23 H 0.06 2.32 8.14 -2.39 -0.02 2.30 15 24 H 0.27 15.41 8.31 -92.71 -0.77 14.63 15 25 H 0.16 4.29 5.42 -2.91 -0.02 4.28 15 26 H 0.18 2.65 8.06 -2.91 -0.02 2.63 15 27 H 0.17 3.39 8.06 -2.91 -0.02 3.36 15 Total: -1.00 -66.01 239.30 6.23 -59.78 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.13 Total: 7.09 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 2.49 Total: -29.87 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.30 Total: -56.99 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.90 Total: -15.64 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.55 Total: -6.55 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.67 Total: 42.18 kcal Total: -66.01 6.23 -59.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041207449.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.452 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds