Wall clock time and date at job start Mon Mar 30 2020 03:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48493 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47377 * 300.00310 * 3 2 1 6 6 H 1.48504 * 109.46864 * 60.00238 * 3 2 1 7 7 C 1.38811 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99494 * 164.69221 * 7 2 1 9 9 N 1.36934 * 120.00516 * 344.69038 * 7 2 1 10 10 C 1.47264 * 121.35526 * 156.01269 * 9 7 2 11 11 C 1.52990 * 108.18966 * 118.47372 * 10 9 7 12 12 N 1.45650 * 110.73637 * 46.74719 * 11 10 9 13 13 C 1.46496 * 117.70235 * 158.07833 * 12 11 10 14 14 C 1.50702 * 109.47071 * 90.00136 * 13 12 11 15 15 O 1.20823 * 120.00016 * 359.97438 * 14 13 12 16 16 O 1.34236 * 119.99801 * 179.97438 * 14 13 12 17 17 C 1.33329 * 124.62961 * 338.02490 * 12 11 10 18 18 O 1.21282 * 118.50475 * 184.34067 * 17 12 11 19 19 C 1.47052 * 121.34961 * 335.98983 * 9 7 2 20 20 H 0.97003 * 119.99271 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.71925 * 358.80087 * 10 9 7 22 22 H 1.09005 * 109.71719 * 238.14605 * 10 9 7 23 23 H 1.09003 * 109.21676 * 167.05667 * 11 10 9 24 24 H 1.08993 * 109.21584 * 286.43917 * 11 10 9 25 25 H 1.09005 * 109.47056 * 209.99842 * 13 12 11 26 26 H 1.08994 * 109.47149 * 329.99493 * 13 12 11 27 27 H 0.96699 * 116.99959 * 179.97438 * 16 14 13 28 28 H 1.08996 * 109.56677 * 342.57836 * 19 9 7 29 29 H 1.08997 * 109.57121 * 102.93692 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0615 -1.2187 -0.2475 9 7 1.3620 -2.3672 0.3120 10 6 1.8597 -3.6710 -0.1581 11 6 2.2031 -4.5210 1.0667 12 7 1.1302 -4.4655 2.0501 13 6 1.0428 -5.5556 3.0249 14 6 1.8598 -5.2075 4.2424 15 8 2.4544 -4.1568 4.2907 16 8 1.9268 -6.0647 5.2733 17 6 0.2222 -3.4922 2.1268 18 8 -0.5754 -3.5153 3.0401 19 6 0.1409 -2.3671 1.1313 20 1 -0.4849 0.8401 0.0004 21 1 2.7520 -3.5261 -0.7671 22 1 1.0888 -4.1684 -0.7467 23 1 2.3515 -5.5551 0.7555 24 1 3.1222 -4.1465 1.5170 25 1 0.0022 -5.7010 3.3150 26 1 1.4273 -6.4731 2.5794 27 1 2.4635 -5.7977 6.0320 28 1 0.0558 -1.4176 1.6597 29 1 -0.7290 -2.5093 0.4901 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060050776.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:14 Heat of formation + Delta-G solvation = -89.274148 kcal Electronic energy + Delta-G solvation = -16380.095596 eV Core-core repulsion = 13497.563072 eV Total energy + Delta-G solvation = -2882.532524 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.42400 -39.13846 -36.08042 -35.93232 -34.53369 -31.65379 -29.09984 -28.52250 -25.99852 -23.65775 -22.25931 -21.21530 -18.18990 -18.03251 -17.08952 -16.57852 -16.26025 -15.62786 -15.33236 -14.67320 -14.43347 -13.73196 -13.32757 -13.15369 -12.60193 -12.48869 -12.15796 -11.66292 -11.39907 -11.34112 -10.88446 -10.72656 -10.53950 -10.47844 -10.25688 -9.96820 -9.20684 -8.65364 -8.42714 -6.93873 -5.90892 -3.33214 2.38712 2.84890 3.35419 3.40532 3.43543 3.45441 3.66444 4.40287 4.99536 5.18069 5.27389 5.36069 5.39853 5.56995 5.65696 5.87777 6.01048 6.37454 6.57981 6.61237 6.65409 6.99656 7.20244 7.68085 7.95924 8.03891 8.19452 8.72414 9.04875 9.65304 10.18614 11.19623 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.037655 B = 0.007975 C = 0.007846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.405713 B = 3510.016317 C = 3567.849549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.004 3.996 3 Si 0.910 3.090 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.256 4.256 8 H 0.075 0.925 9 N -0.594 5.594 10 C 0.131 3.869 11 C 0.098 3.902 12 N -0.587 5.587 13 C 0.115 3.885 14 C 0.457 3.543 15 O -0.498 6.498 16 O -0.524 6.524 17 C 0.508 3.492 18 O -0.571 6.571 19 C 0.170 3.830 20 H 0.258 0.742 21 H 0.078 0.922 22 H 0.035 0.965 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.123 0.877 26 H 0.114 0.886 27 H 0.405 0.595 28 H 0.117 0.883 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.792 -12.201 3.487 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.195 4.195 3 Si 0.739 3.261 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.385 4.385 8 H 0.093 0.907 9 N -0.318 5.318 10 C 0.003 3.997 11 C -0.027 4.027 12 N -0.320 5.320 13 C -0.011 4.011 14 C 0.297 3.703 15 O -0.383 6.383 16 O -0.336 6.336 17 C 0.299 3.701 18 O -0.450 6.450 19 C 0.042 3.958 20 H 0.068 0.932 21 H 0.097 0.903 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.140 0.860 26 H 0.132 0.868 27 H 0.263 0.737 28 H 0.135 0.865 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.207 -11.804 3.573 12.744 hybrid contribution 0.893 1.012 0.635 1.491 sum 4.100 -10.793 4.208 12.288 Atomic orbital electron populations 1.69958 1.05280 1.26024 1.53858 1.25060 0.95466 0.98654 1.00322 0.86111 0.79238 0.83385 0.77349 1.20145 1.21556 1.21388 1.19214 0.92395 0.83909 1.42984 0.90748 1.44153 1.28675 1.01688 1.57253 1.21249 0.99017 0.87084 0.92307 1.22172 0.89659 1.00113 0.90764 1.47194 1.31166 1.23159 1.30508 1.20900 1.01672 0.92288 0.86287 1.24409 0.79714 0.81706 0.84501 1.90765 1.42696 1.24582 1.80290 1.84526 1.69192 1.50680 1.29169 1.22324 0.78192 0.82780 0.86839 1.90602 1.42342 1.76602 1.35464 1.21007 0.90270 0.94452 0.90114 0.93190 0.90323 0.94749 0.91675 0.92017 0.85953 0.86789 0.73652 0.86494 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.94 11.07 55.49 0.61 -25.32 15 2 C 0.00 0.10 5.01 -17.43 -0.09 0.01 15 3 Si 0.91 21.61 29.58 -169.99 -5.03 16.58 15 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 15 7 C -0.26 -6.84 9.70 -15.06 -0.15 -6.98 15 8 H 0.07 1.92 7.88 -52.48 -0.41 1.51 15 9 N -0.59 -14.47 3.02 -173.70 -0.52 -15.00 15 10 C 0.13 2.45 6.60 -3.63 -0.02 2.42 15 11 C 0.10 1.58 6.58 -4.50 -0.03 1.55 15 12 N -0.59 -10.76 2.30 -176.27 -0.41 -11.17 15 13 C 0.11 1.66 5.76 -5.20 -0.03 1.63 15 14 C 0.46 7.20 8.38 36.01 0.30 7.51 15 15 O -0.50 -10.12 17.17 -18.75 -0.32 -10.44 15 16 O -0.52 -6.15 13.42 -39.27 -0.53 -6.68 15 17 C 0.51 11.45 7.54 -11.75 -0.09 11.37 15 18 O -0.57 -13.96 16.25 5.56 0.09 -13.87 15 19 C 0.17 4.21 5.13 -5.02 -0.03 4.19 15 20 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 21 H 0.08 1.37 7.96 -51.93 -0.41 0.95 15 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 15 23 H 0.06 0.77 7.84 -51.93 -0.41 0.37 15 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.12 1.78 7.23 -51.93 -0.38 1.40 15 26 H 0.11 1.14 7.80 -51.93 -0.41 0.73 15 27 H 0.41 3.14 9.10 45.56 0.41 3.55 15 28 H 0.12 3.30 6.42 -51.93 -0.33 2.97 15 29 H 0.07 1.68 8.14 -51.93 -0.42 1.26 15 LS Contribution 255.82 15.07 3.86 3.86 Total: -1.00 -34.23 255.82 -4.71 -38.95 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -2.34 Total: 1.40 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: -0.13 Total: 21.69 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.32 Total: -51.49 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.76 Total: -30.99 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.23 -4.71 -38.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060050776.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.327 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds