Wall clock time and date at job start Mon Mar 30 2020 03:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 120.00412 * 2 1 4 4 H 1.48497 * 109.47370 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47025 * 300.00630 * 3 2 1 6 6 H 1.48501 * 109.46737 * 59.99618 * 3 2 1 7 7 C 1.38958 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99631 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99546 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00294 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99788 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47321 * 179.97438 * 12 10 9 14 14 C 1.47957 * 111.00051 * 170.00087 * 13 12 10 15 15 C 1.53934 * 86.17811 * 222.41749 * 14 13 12 16 16 C 1.50706 * 113.73362 * 138.08265 * 15 14 13 17 17 O 1.20827 * 119.99684 * 1.89375 * 16 15 14 18 18 O 1.34225 * 119.99835 * 181.90357 * 16 15 14 19 19 C 1.48186 * 111.07096 * 70.56559 * 13 12 10 20 20 H 0.96995 * 119.99607 * 359.97438 * 1 2 3 21 21 H 0.96997 * 119.99977 * 359.97438 * 9 7 2 22 22 H 1.08999 * 109.47022 * 60.00096 * 12 10 9 23 23 H 1.08996 * 109.47553 * 300.00169 * 12 10 9 24 24 H 1.09006 * 113.75754 * 108.10281 * 14 13 12 25 25 H 1.08999 * 113.75952 * 336.73294 * 14 13 12 26 26 H 1.08998 * 113.73400 * 269.25445 * 15 14 13 27 27 H 0.96700 * 116.99825 * 180.02562 * 18 16 15 28 28 H 1.09000 * 113.75847 * 23.24037 * 19 13 12 29 29 H 1.08998 * 113.82742 * 251.81310 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0022 12 6 1.2437 -4.8630 -0.0032 13 7 2.1983 -5.9796 -0.0050 14 6 1.5090 -7.2668 0.2343 15 6 2.6863 -7.6061 1.1661 16 6 2.2698 -8.2753 2.4507 17 8 1.1050 -8.5268 2.6507 18 8 3.1927 -8.5916 3.3725 19 6 2.8952 -6.0868 1.2984 20 1 -0.4849 0.8400 0.0004 21 1 0.3534 -2.3906 -0.0016 22 1 0.6167 -4.9201 -0.8930 23 1 0.6174 -4.9213 0.8869 24 1 1.4497 -7.9039 -0.6483 25 1 0.5549 -7.1646 0.7514 26 1 3.5074 -8.1199 0.6664 27 1 2.8776 -9.0199 4.1801 28 1 2.3474 -5.6387 2.1274 29 1 3.9413 -5.7827 1.2646 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070569503.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:00 Heat of formation + Delta-G solvation = -89.680406 kcal Electronic energy + Delta-G solvation = -15517.170697 eV Core-core repulsion = 12634.620556 eV Total energy + Delta-G solvation = -2882.550141 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.94282 -39.19250 -37.60853 -36.18985 -33.92649 -31.39560 -30.72204 -26.63848 -26.02319 -24.48769 -22.19664 -19.63996 -19.27995 -18.31193 -17.90689 -16.96572 -16.28876 -15.72085 -15.39595 -14.66993 -14.43507 -14.03874 -13.70055 -13.32436 -12.69941 -12.60505 -12.08120 -11.80246 -11.70967 -11.50952 -11.11208 -11.04348 -10.73610 -10.56269 -10.35020 -10.23212 -9.52782 -8.77026 -8.28309 -7.97959 -6.42933 -3.83846 2.03242 2.86674 3.15598 3.26366 3.33606 3.85138 3.93279 4.15442 4.27278 4.81703 4.92442 5.15289 5.19636 5.25662 5.46494 5.62824 5.68187 5.75358 5.88505 6.14032 6.22097 6.32917 6.49627 7.06605 7.54365 7.74568 8.04338 8.59493 9.16465 9.52420 10.03584 10.74869 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.053759 B = 0.005183 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.719655 B = 5401.066493 C = 5481.085040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.580 6.580 12 C 0.010 3.990 13 N -0.452 5.452 14 C 0.019 3.981 15 C -0.122 4.122 16 C 0.489 3.511 17 O -0.517 6.517 18 O -0.513 6.513 19 C 0.042 3.958 20 H 0.271 0.729 21 H 0.392 0.608 22 H 0.095 0.905 23 H 0.057 0.943 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.135 0.865 27 H 0.407 0.593 28 H 0.071 0.929 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 -13.652 3.794 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.464 6.464 12 C -0.122 4.122 13 N -0.174 5.174 14 C -0.110 4.110 15 C -0.142 4.142 16 C 0.331 3.669 17 O -0.406 6.406 18 O -0.324 6.324 19 C -0.087 4.087 20 H 0.081 0.919 21 H 0.225 0.775 22 H 0.113 0.887 23 H 0.075 0.925 24 H 0.118 0.882 25 H 0.102 0.898 26 H 0.153 0.847 27 H 0.266 0.734 28 H 0.090 0.910 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.348 -13.227 2.872 13.738 hybrid contribution -1.096 0.546 1.266 1.761 sum 1.252 -12.682 4.138 13.398 Atomic orbital electron populations 1.69622 1.05958 1.28092 1.50579 1.25276 0.95640 0.99757 0.97297 0.85794 0.79713 0.81092 0.77712 1.19191 1.20726 1.20763 1.19758 0.93404 0.82168 1.47530 0.87818 1.41875 1.09223 1.04597 1.64309 1.19647 0.88361 0.84481 0.84702 1.90519 1.13570 1.86995 1.55271 1.22484 0.95068 0.92361 1.02317 1.68488 1.18621 1.00229 1.30084 1.24028 0.95629 0.93149 0.98203 1.23125 1.02363 0.97992 0.90698 1.23488 0.83405 0.74782 0.85244 1.90712 1.20087 1.51129 1.78632 1.84580 1.43129 1.73537 1.31193 1.23790 1.03455 0.89292 0.92182 0.91894 0.77452 0.88708 0.92541 0.88223 0.89791 0.84750 0.73425 0.91042 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 13.05 55.50 0.72 -23.87 15 2 C 0.02 0.59 5.50 -17.46 -0.10 0.49 15 3 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 15 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 15 9 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 15 10 C 0.44 10.49 7.59 -10.99 -0.08 10.41 15 11 O -0.58 -15.59 15.13 5.55 0.08 -15.51 15 12 C 0.01 0.17 5.31 -4.97 -0.03 0.15 15 13 N -0.45 -7.45 5.95 -239.61 -1.42 -8.88 15 14 C 0.02 0.24 7.31 -2.76 -0.02 0.22 15 15 C -0.12 -1.47 4.43 -90.84 -0.40 -1.87 15 16 C 0.49 5.89 7.86 36.01 0.28 6.17 15 17 O -0.52 -7.57 16.67 -18.75 -0.31 -7.88 15 18 O -0.51 -4.91 13.42 -39.24 -0.53 -5.43 15 19 C 0.04 0.64 6.33 -2.64 -0.02 0.62 15 20 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 21 H 0.39 9.56 7.90 -40.82 -0.32 9.24 15 22 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 23 H 0.06 0.93 7.70 -51.93 -0.40 0.53 15 24 H 0.10 1.09 8.14 -51.93 -0.42 0.66 15 25 H 0.08 1.10 7.09 -51.93 -0.37 0.73 15 26 H 0.13 1.37 8.14 -51.93 -0.42 0.94 15 27 H 0.41 2.09 9.10 45.56 0.41 2.51 15 28 H 0.07 1.12 7.74 -51.93 -0.40 0.72 15 29 H 0.11 1.77 8.09 -51.93 -0.42 1.35 15 LS Contribution 261.91 15.07 3.95 3.95 Total: -1.00 -33.21 261.91 -5.37 -38.59 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -2.28 Total: 9.72 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -0.51 Total: 7.69 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.76 Total: -47.15 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.76 Total: -28.83 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.21 -5.37 -38.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070569503.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.093 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds