Wall clock time and date at job start Mon Mar 30 2020 03:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86806 * 119.99626 * 2 1 4 4 H 1.48500 * 109.47270 * 270.00240 * 3 2 1 5 5 H 1.48497 * 109.46961 * 30.00040 * 3 2 1 6 6 H 1.48499 * 109.46776 * 150.00198 * 3 2 1 7 7 C 1.40112 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00365 * 179.97438 * 7 2 1 9 9 C 1.46251 * 119.99986 * 0.02562 * 7 2 1 10 10 O 1.21654 * 119.99673 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00042 * 179.97438 * 9 7 2 12 12 C 1.34776 * 120.00124 * 179.97438 * 11 9 7 13 13 O 1.21552 * 119.99543 * 5.16691 * 12 11 9 14 14 N 1.34774 * 120.00110 * 185.15953 * 12 11 9 15 15 C 1.47170 * 120.93975 * 174.94776 * 14 12 11 16 16 C 1.53289 * 108.37578 * 230.51493 * 15 14 12 17 17 O 1.42963 * 109.26575 * 307.77568 * 16 15 14 18 18 C 1.42967 * 114.16529 * 62.55649 * 17 16 15 19 19 C 1.47150 * 120.98388 * 355.01249 * 14 12 11 20 20 H 0.97002 * 120.00350 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00080 * 0.02562 * 11 9 7 22 22 H 1.09003 * 109.63899 * 110.82123 * 15 14 12 23 23 H 1.08994 * 109.72833 * 350.26319 * 15 14 12 24 24 H 1.09000 * 109.51931 * 187.82913 * 16 15 14 25 25 H 1.08999 * 109.51553 * 67.72615 * 16 15 14 26 26 H 1.09003 * 109.51274 * 57.34195 * 18 17 16 27 27 H 1.08999 * 109.51060 * 177.44584 * 18 17 16 28 28 H 1.09002 * 109.67766 * 9.71061 * 19 14 12 29 29 H 1.08998 * 109.68422 * 249.16223 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0466 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4403 0.7000 7 6 2.0071 -1.2134 0.0005 8 1 3.0871 -1.2134 0.0001 9 6 1.2759 -2.4800 0.0005 10 8 0.0593 -2.4800 -0.0004 11 7 1.9498 -3.6471 0.0005 12 6 1.2760 -4.8144 0.0011 13 8 0.0642 -4.8165 -0.0933 14 7 1.9459 -5.9791 0.1060 15 6 1.2267 -7.2581 0.2197 16 6 1.7963 -8.0281 1.4165 17 8 3.2184 -8.1072 1.2929 18 6 3.8791 -6.8395 1.3145 19 6 3.4171 -6.0090 0.1117 20 1 -0.4851 0.8400 0.0004 21 1 2.9198 -3.6471 0.0009 22 1 1.3670 -7.8396 -0.6915 23 1 0.1645 -7.0702 0.3759 24 1 1.3762 -9.0337 1.4358 25 1 1.5394 -7.5085 2.3395 26 1 3.6297 -6.3147 2.2368 27 1 4.9573 -6.9900 1.2614 28 1 3.8045 -4.9937 0.1961 29 1 3.7786 -6.4650 -0.8099 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075599670.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:40 Heat of formation + Delta-G solvation = -128.553503 kcal Electronic energy + Delta-G solvation = -16085.524419 eV Core-core repulsion = 13201.288614 eV Total energy + Delta-G solvation = -2884.235805 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.86364 -39.91337 -38.26638 -35.91137 -35.02242 -34.46619 -32.30974 -29.28161 -28.36477 -25.26331 -24.21046 -22.31906 -20.70956 -20.14000 -18.53759 -17.71841 -17.26003 -16.92837 -16.76257 -16.09992 -16.02322 -15.63935 -15.31523 -14.90592 -14.60363 -13.88284 -13.53321 -13.27672 -12.90412 -12.77250 -12.70827 -12.36523 -12.02358 -11.85320 -11.39668 -11.19217 -11.02929 -10.60399 -9.89025 -9.57817 -8.39484 -7.03418 1.39240 1.40622 1.55455 1.62965 1.77092 2.24597 2.55062 2.85996 3.06712 3.55009 3.74961 3.96693 4.07461 4.10747 4.26573 4.48123 4.64579 4.73861 4.82684 4.92133 5.21907 5.31148 5.42236 5.61653 5.91293 6.07822 6.36548 6.70782 6.92949 7.65887 8.28724 8.54156 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.051430 B = 0.006579 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.299746 B = 4255.227027 C = 4675.089735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.023 3.977 3 Si 1.012 2.988 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.239 1.239 7 C -0.555 4.555 8 H 0.108 0.892 9 C 0.520 3.480 10 O -0.582 6.582 11 N -0.686 5.686 12 C 0.687 3.313 13 O -0.605 6.605 14 N -0.632 5.632 15 C 0.088 3.912 16 C 0.057 3.943 17 O -0.387 6.387 18 C 0.049 3.951 19 C 0.068 3.932 20 H 0.279 0.721 21 H 0.410 0.590 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.136 0.864 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.142 0.858 28 H 0.099 0.901 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.218 -10.764 2.183 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.193 4.193 3 Si 0.830 3.170 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.590 4.590 8 H 0.126 0.874 9 C 0.326 3.674 10 O -0.463 6.463 11 N -0.353 5.353 12 C 0.390 3.610 13 O -0.482 6.482 14 N -0.373 5.373 15 C -0.035 4.035 16 C -0.020 4.020 17 O -0.305 6.305 18 C -0.028 4.028 19 C -0.054 4.054 20 H 0.089 0.911 21 H 0.249 0.751 22 H 0.106 0.894 23 H 0.094 0.906 24 H 0.153 0.847 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.160 0.840 28 H 0.117 0.883 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.548 -10.846 2.113 15.983 hybrid contribution 0.017 0.913 -0.090 0.918 sum 11.565 -9.932 2.023 15.378 Atomic orbital electron populations 1.70197 1.10080 1.29725 1.34674 1.27219 0.95567 1.05580 0.90955 0.84805 0.78781 0.73806 0.79592 1.18458 1.20062 1.16172 1.21461 0.95412 0.88387 1.53774 0.87393 1.19102 0.87380 0.83424 0.77478 1.90696 1.16073 1.86518 1.53014 1.44469 1.11889 1.05310 1.73663 1.16590 0.85167 0.81561 0.77718 1.90924 1.14425 1.86456 1.56405 1.47600 1.07781 1.04514 1.77401 1.22306 0.97588 0.82798 1.00763 1.23025 0.81212 1.02350 0.95451 1.87927 1.19048 1.29306 1.94246 1.23141 0.99527 0.84085 0.96022 1.22686 0.78058 1.03030 1.01635 0.91053 0.75102 0.89394 0.90556 0.84664 0.93440 0.93031 0.84046 0.88329 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.14 11.83 21.85 0.26 -49.88 15 2 C 0.02 1.24 5.50 85.32 0.47 1.71 15 3 Si 1.01 38.82 29.56 68.60 2.03 40.85 15 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 5 H -0.28 -10.38 7.11 99.48 0.71 -9.68 15 6 H -0.24 -8.17 7.11 99.48 0.71 -7.46 15 7 C -0.55 -30.23 9.54 24.81 0.24 -30.00 15 8 H 0.11 4.93 7.85 -2.91 -0.02 4.91 15 9 C 0.52 31.07 7.68 86.33 0.66 31.73 15 10 O -0.58 -41.91 13.43 18.53 0.25 -41.66 15 11 N -0.69 -31.99 5.15 -444.52 -2.29 -34.27 15 12 C 0.69 32.37 8.25 179.06 1.48 33.85 15 13 O -0.60 -35.98 14.25 18.85 0.27 -35.71 15 14 N -0.63 -20.93 3.02 -835.37 -2.52 -23.45 15 15 C 0.09 2.49 6.62 86.35 0.57 3.06 15 16 C 0.06 1.22 6.98 72.08 0.50 1.73 15 17 O -0.39 -8.26 10.74 -148.98 -1.60 -9.86 15 18 C 0.05 0.90 6.99 72.08 0.50 1.40 15 19 C 0.07 1.50 6.63 86.35 0.57 2.07 15 20 H 0.28 15.42 8.29 -92.71 -0.77 14.65 15 21 H 0.41 14.56 6.19 -92.71 -0.57 13.99 15 22 H 0.09 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.08 2.55 7.12 -2.39 -0.02 2.54 15 24 H 0.14 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 15 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 15 27 H 0.14 1.56 8.14 -2.39 -0.02 1.54 15 28 H 0.10 1.97 5.66 -2.39 -0.01 1.95 15 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 15 Total: -1.00 -88.80 251.44 2.00 -86.80 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.61 Total: 21.64 kcal Atomic # 6 Polarization: 40.55 SS G_CDS: 5.00 Total: 45.55 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -4.55 Total: -107.61 kcal Atomic # 8 Polarization: -86.15 SS G_CDS: -1.08 Total: -87.23 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -88.80 2.00 -86.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599670.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.749 kcal (2) G-P(sol) polarization free energy of solvation -88.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds