Wall clock time and date at job start Mon Mar 30 2020 03:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99706 * 2 1 4 4 H 1.48509 * 109.46924 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47545 * 29.99595 * 3 2 1 6 6 H 1.48501 * 109.47038 * 149.99831 * 3 2 1 7 7 C 1.37875 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00094 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99982 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46936 * 300.00185 * 9 7 2 11 11 O 1.42901 * 109.47113 * 59.99928 * 9 7 2 12 12 C 1.50699 * 109.47225 * 179.97438 * 9 7 2 13 13 C 1.36122 * 120.17336 * 265.00377 * 12 9 7 14 14 C 1.39329 * 120.99059 * 180.02562 * 13 12 9 15 15 C 1.36135 * 120.98917 * 0.02562 * 14 13 12 16 16 C 1.40496 * 119.64918 * 359.97438 * 15 14 13 17 17 C 1.40549 * 121.28759 * 180.02562 * 16 15 14 18 18 C 1.36094 * 119.65575 * 179.97438 * 17 16 15 19 19 C 1.39379 * 120.99110 * 0.02874 * 18 17 16 20 20 C 1.36095 * 120.99632 * 359.95136 * 19 18 17 21 21 C 1.40498 * 120.17147 * 85.02011 * 12 9 7 22 22 H 0.96996 * 120.00079 * 0.02562 * 1 2 3 23 23 H 0.96698 * 113.99788 * 59.99506 * 11 9 7 24 24 H 1.08000 * 119.50985 * 0.04062 * 13 12 9 25 25 H 1.07998 * 119.50932 * 180.02562 * 14 13 12 26 26 H 1.07993 * 120.17200 * 179.70094 * 15 14 13 27 27 H 1.08001 * 120.17178 * 359.93364 * 17 16 15 28 28 H 1.07990 * 119.50654 * 179.97438 * 18 17 16 29 29 H 1.08003 * 119.50208 * 179.97438 * 19 18 17 30 30 H 1.07993 * 120.17244 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8902 11 8 0.4301 -2.5751 -1.1665 12 6 2.2305 -3.6446 0.0005 13 6 2.5972 -4.2312 -1.1718 14 6 3.5008 -5.2915 -1.1915 15 6 4.0429 -5.7721 -0.0389 16 6 3.6883 -5.1920 1.1906 17 6 4.2273 -5.6604 2.4011 18 6 3.8610 -5.0735 3.5731 19 6 2.9570 -4.0128 3.5928 20 6 2.4150 -3.5324 2.4406 21 6 2.7695 -4.1127 1.2106 22 1 -0.4850 0.8400 -0.0004 23 1 0.9225 -2.5299 -1.9975 24 1 2.1817 -3.8691 -2.1006 25 1 3.7754 -5.7390 -2.1353 26 1 4.7383 -6.5977 -0.0691 27 1 4.9280 -6.4822 2.4013 28 1 4.2763 -5.4356 4.5019 29 1 2.6828 -3.5652 4.5367 30 1 1.7161 -2.7097 2.4713 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075599874.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:27 Heat of formation + Delta-G solvation = -13.266822 kcal Electronic energy + Delta-G solvation = -15128.166288 eV Core-core repulsion = 12659.778952 eV Total energy + Delta-G solvation = -2468.387336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90153 -36.56126 -35.16607 -32.25143 -32.11711 -29.77030 -28.79822 -26.65880 -23.42714 -22.55172 -22.31600 -19.88966 -17.11669 -16.91424 -16.48009 -15.81435 -14.68577 -14.53775 -14.08617 -13.51060 -13.17477 -13.09792 -12.82122 -12.55303 -12.06450 -11.52250 -11.35943 -11.10695 -10.96355 -10.72620 -10.54501 -10.39318 -10.21522 -9.42050 -9.05651 -8.65072 -8.36561 -8.08075 -7.20733 -6.07963 -4.27916 1.11625 1.54876 2.64421 3.24341 3.31579 3.35539 3.55043 4.33641 4.71493 5.10263 5.17003 5.29337 5.36227 5.52355 5.54679 5.76912 5.91210 5.94500 5.98395 6.26096 6.34843 6.56116 6.62261 6.77392 6.79999 6.94467 7.07427 7.16127 7.38193 7.58524 7.69571 7.78111 8.03971 8.74881 9.24884 9.48050 10.94774 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.009266 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.549596 B = 3021.195784 C = 3529.779617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.562 4.562 8 H 0.058 0.942 9 C 0.257 3.743 10 H 0.072 0.928 11 O -0.559 6.559 12 C -0.046 4.046 13 C -0.141 4.141 14 C -0.100 4.100 15 C -0.144 4.144 16 C -0.048 4.048 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.143 4.143 20 C -0.074 4.074 21 C -0.050 4.050 22 H 0.262 0.738 23 H 0.347 0.653 24 H 0.119 0.881 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -8.725 2.590 11.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.600 4.600 8 H 0.076 0.924 9 C 0.199 3.801 10 H 0.089 0.911 11 O -0.363 6.363 12 C -0.047 4.047 13 C -0.159 4.159 14 C -0.118 4.118 15 C -0.162 4.162 16 C -0.048 4.048 17 C -0.142 4.142 18 C -0.135 4.135 19 C -0.161 4.161 20 C -0.092 4.092 21 C -0.050 4.050 22 H 0.072 0.928 23 H 0.192 0.808 24 H 0.137 0.863 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.913 -8.661 3.055 10.923 hybrid contribution 1.074 0.986 -0.394 1.510 sum 6.986 -7.675 2.661 10.714 Atomic orbital electron populations 1.70071 1.05900 1.26718 1.46650 1.25037 0.94737 0.99133 0.93690 0.86620 0.80026 0.83165 0.78348 1.20429 1.21003 1.19693 1.21474 0.93215 0.90212 1.55060 0.92374 1.18543 0.86850 0.87987 0.86695 0.91068 1.86619 1.38030 1.96217 1.15398 1.21348 0.96077 0.95594 0.91673 1.20552 0.99499 0.97458 0.98408 1.20774 0.96753 0.96632 0.97674 1.20756 1.02255 1.01256 0.91980 1.18088 0.97043 0.95956 0.93721 1.20861 1.00842 1.00499 0.92005 1.20740 0.98272 0.96841 0.97601 1.20774 0.99071 0.97999 0.98294 1.21352 0.98264 0.98215 0.91325 1.18010 0.97388 0.95656 0.93961 0.92771 0.80839 0.86269 0.86862 0.86630 0.86472 0.86828 0.86523 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 12.84 55.43 0.71 -23.94 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.56 -15.13 8.75 -34.44 -0.30 -15.43 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.26 6.46 2.47 -29.03 -0.07 6.38 16 10 H 0.07 1.93 6.71 -51.93 -0.35 1.58 16 11 O -0.56 -14.23 12.38 -35.23 -0.44 -14.67 16 12 C -0.05 -1.02 5.01 -104.53 -0.52 -1.54 16 13 C -0.14 -2.73 9.24 -39.94 -0.37 -3.10 16 14 C -0.10 -1.66 9.95 -39.93 -0.40 -2.06 16 15 C -0.14 -2.35 9.77 -39.49 -0.39 -2.74 16 16 C -0.05 -0.87 5.74 -106.83 -0.61 -1.48 16 17 C -0.12 -1.91 9.77 -39.48 -0.39 -2.30 16 18 C -0.12 -1.72 9.95 -39.93 -0.40 -2.12 16 19 C -0.14 -2.35 9.95 -39.93 -0.40 -2.75 16 20 C -0.07 -1.45 9.28 -39.48 -0.37 -1.81 16 21 C -0.05 -1.03 5.74 -106.83 -0.61 -1.64 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.35 7.75 7.31 45.56 0.33 8.08 16 24 H 0.12 2.15 6.34 -52.49 -0.33 1.81 16 25 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.14 2.87 6.49 -52.49 -0.34 2.53 16 LS Contribution 260.25 15.07 3.92 3.92 Total: -1.00 -30.14 260.25 -8.08 -38.23 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -2.34 Total: 9.04 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -4.92 Total: -28.49 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.71 Total: -23.94 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.44 Total: -14.67 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.14 -8.08 -38.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599874.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.960 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds