Wall clock time and date at job start Mon Mar 30 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99706 * 2 1 4 4 H 1.48509 * 109.46924 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47545 * 29.99595 * 3 2 1 6 6 H 1.48501 * 109.47038 * 149.99831 * 3 2 1 7 7 C 1.37875 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00094 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99982 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46936 * 300.00185 * 9 7 2 11 11 O 1.42901 * 109.47113 * 59.99928 * 9 7 2 12 12 C 1.50699 * 109.47225 * 179.97438 * 9 7 2 13 13 C 1.36122 * 120.17336 * 265.00377 * 12 9 7 14 14 C 1.39329 * 120.99059 * 180.02562 * 13 12 9 15 15 C 1.36135 * 120.98917 * 0.02562 * 14 13 12 16 16 C 1.40496 * 119.64918 * 359.97438 * 15 14 13 17 17 C 1.40549 * 121.28759 * 180.02562 * 16 15 14 18 18 C 1.36094 * 119.65575 * 179.97438 * 17 16 15 19 19 C 1.39379 * 120.99110 * 0.02874 * 18 17 16 20 20 C 1.36095 * 120.99632 * 359.95136 * 19 18 17 21 21 C 1.40498 * 120.17147 * 85.02011 * 12 9 7 22 22 H 0.96996 * 120.00079 * 0.02562 * 1 2 3 23 23 H 0.96698 * 113.99788 * 59.99506 * 11 9 7 24 24 H 1.08000 * 119.50985 * 0.04062 * 13 12 9 25 25 H 1.07998 * 119.50932 * 180.02562 * 14 13 12 26 26 H 1.07993 * 120.17200 * 179.70094 * 15 14 13 27 27 H 1.08001 * 120.17178 * 359.93364 * 17 16 15 28 28 H 1.07990 * 119.50654 * 179.97438 * 18 17 16 29 29 H 1.08003 * 119.50208 * 179.97438 * 19 18 17 30 30 H 1.07993 * 120.17244 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8902 11 8 0.4301 -2.5751 -1.1665 12 6 2.2305 -3.6446 0.0005 13 6 2.5972 -4.2312 -1.1718 14 6 3.5008 -5.2915 -1.1915 15 6 4.0429 -5.7721 -0.0389 16 6 3.6883 -5.1920 1.1906 17 6 4.2273 -5.6604 2.4011 18 6 3.8610 -5.0735 3.5731 19 6 2.9570 -4.0128 3.5928 20 6 2.4150 -3.5324 2.4406 21 6 2.7695 -4.1127 1.2106 22 1 -0.4850 0.8400 -0.0004 23 1 0.9225 -2.5299 -1.9975 24 1 2.1817 -3.8691 -2.1006 25 1 3.7754 -5.7390 -2.1353 26 1 4.7383 -6.5977 -0.0691 27 1 4.9280 -6.4822 2.4013 28 1 4.2763 -5.4356 4.5019 29 1 2.6828 -3.5652 4.5367 30 1 1.7161 -2.7097 2.4713 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075599874.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:26 Heat of formation + Delta-G solvation = -32.086893 kcal Electronic energy + Delta-G solvation = -15128.982388 eV Core-core repulsion = 12659.778952 eV Total energy + Delta-G solvation = -2469.203436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.28475 -38.21156 -36.72268 -34.34814 -33.61969 -31.10956 -30.25214 -28.55467 -25.20507 -23.96594 -23.67383 -21.43480 -19.16686 -18.24119 -17.93260 -17.27483 -16.71243 -16.18919 -15.49850 -15.12567 -14.69156 -14.55978 -14.32828 -14.03458 -13.61365 -13.27265 -13.11066 -12.84774 -12.67587 -12.22421 -12.11399 -11.95436 -11.71627 -11.17739 -10.85559 -10.54656 -10.30123 -9.42166 -8.63437 -8.15525 -6.44976 -0.23499 0.20447 1.25750 1.36690 1.37502 1.48668 2.21169 2.36752 3.05630 3.31961 3.83630 4.03908 4.10169 4.16608 4.22592 4.32982 4.49074 4.61394 4.64609 4.72838 4.97121 5.12534 5.26641 5.39231 5.47372 5.49238 5.58678 5.66733 5.72344 5.96669 5.99384 6.12013 6.25994 6.64091 7.24865 7.42770 8.85236 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.009266 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.549596 B = 3021.195784 C = 3529.779617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.030 3.970 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.567 4.567 8 H 0.048 0.952 9 C 0.263 3.737 10 H 0.033 0.967 11 O -0.576 6.576 12 C -0.091 4.091 13 C -0.141 4.141 14 C -0.111 4.111 15 C -0.126 4.126 16 C -0.071 4.071 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.119 4.119 21 C -0.073 4.073 22 H 0.264 0.736 23 H 0.357 0.643 24 H 0.122 0.878 25 H 0.152 0.848 26 H 0.160 0.840 27 H 0.160 0.840 28 H 0.157 0.843 29 H 0.138 0.862 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.429 -10.608 3.067 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.173 4.173 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.605 4.605 8 H 0.067 0.933 9 C 0.206 3.794 10 H 0.051 0.949 11 O -0.381 6.381 12 C -0.091 4.091 13 C -0.159 4.159 14 C -0.129 4.129 15 C -0.143 4.143 16 C -0.071 4.071 17 C -0.130 4.130 18 C -0.136 4.136 19 C -0.147 4.147 20 C -0.137 4.137 21 C -0.073 4.073 22 H 0.073 0.927 23 H 0.204 0.796 24 H 0.139 0.861 25 H 0.169 0.831 26 H 0.178 0.822 27 H 0.178 0.822 28 H 0.175 0.825 29 H 0.156 0.844 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.781 -10.550 3.527 14.172 hybrid contribution 0.224 1.445 -0.479 1.538 sum 9.005 -9.106 3.048 13.164 Atomic orbital electron populations 1.70197 1.07473 1.27605 1.48054 1.25860 0.95515 1.02643 0.93266 0.85570 0.78634 0.78853 0.78644 1.19540 1.20368 1.19399 1.21670 0.92761 0.91598 1.54439 0.93340 1.18170 0.86776 0.89374 0.85071 0.94894 1.86540 1.38986 1.96398 1.16168 1.21021 0.97823 0.96464 0.93804 1.20787 0.99678 0.97987 0.97480 1.21109 0.96086 0.95829 0.99840 1.21292 1.01193 1.01024 0.90799 1.18490 0.96988 0.95574 0.96058 1.21357 1.00147 1.00690 0.90793 1.21190 0.97232 0.95654 0.99486 1.21125 0.97940 0.97786 0.97845 1.21215 1.00232 0.99294 0.92995 1.18216 0.98533 0.97070 0.93468 0.92686 0.79635 0.86052 0.83069 0.82201 0.82214 0.82540 0.84382 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.87 12.84 21.45 0.28 -53.60 16 2 C 0.03 1.70 5.40 84.65 0.46 2.16 16 3 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.57 -32.18 8.75 25.60 0.22 -31.95 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.26 14.23 2.47 29.10 0.07 14.30 16 10 H 0.03 2.00 6.71 -2.39 -0.02 1.98 16 11 O -0.58 -31.14 12.38 -148.98 -1.84 -32.98 16 12 C -0.09 -4.17 5.01 -19.81 -0.10 -4.27 16 13 C -0.14 -5.51 9.24 22.04 0.20 -5.31 16 14 C -0.11 -3.39 9.95 22.04 0.22 -3.17 16 15 C -0.13 -3.60 9.77 22.33 0.22 -3.38 16 16 C -0.07 -2.41 5.74 -21.30 -0.12 -2.53 16 17 C -0.11 -2.97 9.77 22.33 0.22 -2.75 16 18 C -0.12 -3.04 9.95 22.05 0.22 -2.82 16 19 C -0.13 -4.11 9.95 22.05 0.22 -3.89 16 20 C -0.12 -4.92 9.28 22.34 0.21 -4.71 16 21 C -0.07 -3.08 5.74 -21.30 -0.12 -3.20 16 22 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 23 H 0.36 16.89 7.31 -74.06 -0.54 16.35 16 24 H 0.12 4.47 6.34 -2.91 -0.02 4.45 16 25 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 26 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 27 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 28 H 0.16 2.72 8.06 -2.92 -0.02 2.70 16 29 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.10 4.84 6.49 -2.91 -0.02 4.82 16 Total: -1.00 -69.25 260.25 2.99 -66.26 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.62 Total: 25.70 kcal Atomic # 6 Polarization: -53.45 SS G_CDS: 1.91 Total: -51.54 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.28 Total: -53.60 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.84 Total: -32.98 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -69.25 2.99 -66.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599874.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.171 kcal (2) G-P(sol) polarization free energy of solvation -69.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds