Wall clock time and date at job start Mon Mar 30 2020 03:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30718 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48501 * 109.47014 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47115 * 119.99700 * 3 2 1 6 6 H 1.48502 * 109.47051 * 239.99613 * 3 2 1 7 7 C 1.40272 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00012 * 189.61829 * 7 2 1 9 9 C 1.39723 * 120.00114 * 9.62836 * 7 2 1 10 10 O 1.35141 * 125.53516 * 39.00085 * 9 7 2 11 11 C 1.35041 * 109.92059 * 179.82052 * 10 9 7 12 12 C 1.38730 * 132.79305 * 180.09540 * 11 10 9 13 13 C 1.38073 * 119.93574 * 180.36503 * 12 11 10 14 14 C 1.38859 * 120.73205 * 359.97438 * 13 12 11 15 15 C 1.36544 * 120.48009 * 0.03986 * 14 13 12 16 16 C 1.40269 * 119.73421 * 359.95811 * 15 14 13 17 17 C 1.39016 * 125.54133 * 219.30686 * 9 7 2 18 18 C 1.50704 * 126.69550 * 0.02562 * 17 9 7 19 19 C 1.52998 * 117.49780 * 17.25605 * 18 17 9 20 20 C 1.53003 * 117.49728 * 308.59322 * 18 17 9 21 21 H 0.96997 * 120.00260 * 176.43431 * 1 2 3 22 22 H 1.07999 * 120.03243 * 0.35267 * 12 11 10 23 23 H 1.07997 * 119.63684 * 180.02562 * 13 12 11 24 24 H 1.08008 * 119.75766 * 179.97438 * 14 13 12 25 25 H 1.07992 * 120.13212 * 179.97438 * 15 14 13 26 26 H 1.08998 * 115.54863 * 162.92608 * 18 17 9 27 27 H 1.08998 * 117.50078 * 359.97438 * 19 18 17 28 28 H 1.09005 * 117.49753 * 145.02331 * 19 18 17 29 29 H 1.09001 * 117.49868 * 214.97664 * 20 18 17 30 30 H 1.08997 * 117.49597 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 1.2762 2.7464 -0.0006 5 1 3.0949 1.6964 1.2126 6 1 3.0950 1.6963 -1.2125 7 6 2.0085 -1.2148 0.0005 8 1 3.0770 -1.2214 0.1568 9 6 1.3246 -2.4164 -0.2013 10 8 0.3055 -2.6040 -1.0688 11 6 -0.1188 -3.8847 -1.0103 12 6 -1.1144 -4.5793 -1.6817 13 6 -1.3311 -5.9141 -1.4030 14 6 -0.5616 -6.5751 -0.4548 15 6 0.4243 -5.9141 0.2201 16 6 0.6616 -4.5578 -0.0474 17 6 1.5779 -3.6117 0.4619 18 6 2.6258 -3.8509 1.5182 19 6 3.2295 -2.6242 2.2049 20 6 4.0604 -3.4253 1.1992 21 1 -0.4850 -0.8384 -0.0522 22 1 -1.7195 -4.0764 -2.4216 23 1 -2.1072 -6.4503 -1.9289 24 1 -0.7450 -7.6194 -0.2489 25 1 1.0191 -6.4336 0.9567 26 1 2.4894 -4.7489 2.1208 27 1 2.8692 -1.6442 1.8924 28 1 3.4908 -2.7154 3.2592 29 1 4.8678 -4.0430 1.5924 30 1 4.2463 -2.9727 0.2252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077068314.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:42 Heat of formation + Delta-G solvation = 10.600621 kcal Electronic energy + Delta-G solvation = -15312.521708 eV Core-core repulsion = 12845.169342 eV Total energy + Delta-G solvation = -2467.352366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.91234 -38.54842 -38.06809 -35.65286 -33.00993 -31.05040 -30.39878 -27.31942 -23.95873 -23.69465 -23.05581 -22.79766 -20.37459 -20.08597 -17.71340 -17.58420 -16.76169 -16.42656 -15.72379 -15.64899 -15.06906 -14.88158 -14.36972 -14.11494 -13.60539 -13.10865 -12.86464 -12.60049 -12.31726 -12.24826 -12.01040 -11.75565 -11.70506 -11.66490 -11.10100 -10.97245 -10.26968 -9.39986 -9.39197 -8.70498 -6.63811 0.25917 0.68067 1.38998 1.49454 1.77642 1.84341 2.24438 2.40994 2.95859 2.98368 3.39909 3.90304 4.05265 4.20742 4.25403 4.32875 4.46282 4.50034 4.67935 4.77215 4.86136 4.89907 5.15122 5.27208 5.30608 5.42200 5.48659 5.57738 5.63552 5.68072 5.79356 5.94035 6.11494 6.29586 6.57314 6.87259 7.95918 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.028332 B = 0.010261 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.030686 B = 2728.021702 C = 3566.629632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.005 4.005 3 Si 1.125 2.875 4 H -0.274 1.274 5 H -0.246 1.246 6 H -0.257 1.257 7 C -0.524 4.524 8 H 0.118 0.882 9 C 0.190 3.810 10 O -0.240 6.240 11 C -0.055 4.055 12 C -0.108 4.108 13 C -0.145 4.145 14 C -0.118 4.118 15 C -0.135 4.135 16 C -0.079 4.079 17 C -0.331 4.331 18 C -0.056 4.056 19 C -0.194 4.194 20 C -0.174 4.174 21 H 0.275 0.725 22 H 0.126 0.874 23 H 0.160 0.840 24 H 0.156 0.844 25 H 0.128 0.872 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 -5.764 1.121 6.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.220 4.220 3 Si 0.940 3.060 4 H -0.198 1.198 5 H -0.170 1.170 6 H -0.182 1.182 7 C -0.553 4.553 8 H 0.135 0.865 9 C 0.142 3.858 10 O -0.144 6.144 11 C -0.101 4.101 12 C -0.127 4.127 13 C -0.163 4.163 14 C -0.136 4.136 15 C -0.153 4.153 16 C -0.080 4.080 17 C -0.333 4.333 18 C -0.074 4.074 19 C -0.230 4.230 20 C -0.211 4.211 21 H 0.087 0.913 22 H 0.144 0.856 23 H 0.178 0.822 24 H 0.174 0.826 25 H 0.146 0.854 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.479 -3.982 0.997 4.795 hybrid contribution -0.163 -1.639 -0.238 1.664 sum 2.316 -5.620 0.759 6.126 Atomic orbital electron populations 1.70516 1.09083 1.32773 1.32873 1.28828 0.95741 1.07880 0.89518 0.82923 0.74568 0.68708 0.79806 1.19828 1.16996 1.18163 1.20119 0.98167 0.89462 1.47515 0.86497 1.20053 0.83354 0.95878 0.86483 1.84356 1.47971 1.28024 1.54017 1.20305 1.02292 0.83302 1.04225 1.20192 0.96292 0.95203 1.00983 1.21058 1.02182 0.92363 1.00677 1.20984 0.95338 1.00881 0.96377 1.20519 1.00868 0.91409 1.02525 1.19011 0.96606 0.95534 0.96825 1.19618 1.09426 0.94228 1.10047 1.19741 0.91403 0.98369 0.97926 1.23339 1.03986 0.98186 0.97537 1.22907 0.94047 1.04365 0.99772 0.91255 0.85616 0.82249 0.82619 0.85409 0.87908 0.88110 0.87803 0.86945 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.91 13.54 21.89 0.30 -46.61 16 2 C -0.01 -0.28 5.47 85.35 0.47 0.19 16 3 Si 1.13 42.32 29.95 68.60 2.05 44.37 16 4 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 5 H -0.25 -8.22 7.11 99.48 0.71 -7.52 16 6 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 7 C -0.52 -27.66 6.59 23.12 0.15 -27.51 16 8 H 0.12 5.77 5.46 -2.91 -0.02 5.75 16 9 C 0.19 10.62 5.98 22.82 0.14 10.75 16 10 O -0.24 -13.78 9.09 -18.34 -0.17 -13.95 16 11 C -0.06 -2.82 7.37 23.07 0.17 -2.65 16 12 C -0.11 -4.46 10.06 22.35 0.22 -4.23 16 13 C -0.14 -4.78 10.02 22.38 0.22 -4.56 16 14 C -0.12 -3.83 9.97 22.02 0.22 -3.61 16 15 C -0.13 -5.29 10.08 22.37 0.23 -5.07 16 16 C -0.08 -3.85 6.13 -21.37 -0.13 -3.98 16 17 C -0.33 -16.91 5.95 -18.95 -0.11 -17.02 16 18 C -0.06 -2.39 6.29 -11.54 -0.07 -2.46 16 19 C -0.19 -7.59 9.58 30.62 0.29 -7.30 16 20 C -0.17 -6.46 9.73 30.62 0.30 -6.16 16 21 H 0.28 16.66 6.39 -92.71 -0.59 16.06 16 22 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 23 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 24 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 25 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 26 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 27 H 0.10 4.50 4.90 -2.39 -0.01 4.49 16 28 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 29 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.07 2.87 7.34 -2.39 -0.02 2.85 16 Total: -1.00 -64.57 257.89 5.61 -58.96 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 1.33 Total: 30.84 kcal Atomic # 6 Polarization: -75.71 SS G_CDS: 2.10 Total: -73.61 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.30 Total: -46.61 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.17 Total: -13.95 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.05 Total: 44.37 kcal Total: -64.57 5.61 -58.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077068314.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.559 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds