Wall clock time and date at job start Mon Mar 30 2020 03:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86794 * 119.99824 * 2 1 4 4 H 1.48498 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47125 * 299.99706 * 3 2 1 6 6 H 1.48503 * 109.47282 * 59.99762 * 3 2 1 7 7 C 1.39583 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00349 * 180.02562 * 7 2 1 9 9 N 1.36129 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00114 * 179.97438 * 9 7 2 11 11 O 1.21501 * 119.99822 * 359.97438 * 10 9 7 12 12 C 1.48828 * 120.00086 * 180.02562 * 10 9 7 13 13 O 1.21435 * 120.00187 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00086 * 179.97438 * 12 10 9 15 15 C 1.46497 * 120.00069 * 179.97438 * 14 12 10 16 16 C 1.53781 * 113.61717 * 204.99859 * 15 14 12 17 17 C 1.53774 * 87.08242 * 220.02326 * 16 15 14 18 18 O 1.42903 * 113.61673 * 139.98515 * 17 16 15 19 19 C 1.53776 * 87.08537 * 25.43454 * 17 16 15 20 20 H 0.96993 * 120.00165 * 0.02562 * 1 2 3 21 21 H 0.96993 * 119.99614 * 0.02562 * 9 7 2 22 22 H 0.97008 * 119.99797 * 359.97438 * 14 12 10 23 23 H 1.08990 * 112.90970 * 336.25494 * 15 14 12 24 24 H 1.08995 * 113.61579 * 105.46550 * 16 15 14 25 25 H 1.09002 * 113.61441 * 334.57201 * 16 15 14 26 26 H 1.09002 * 113.61259 * 270.79727 * 17 16 15 27 27 H 0.96700 * 114.00311 * 179.97438 * 18 17 16 28 28 H 1.08994 * 113.61624 * 89.11363 * 19 17 16 29 29 H 1.08999 * 113.61419 * 220.02613 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.7041 1.3464 0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8853 2.3965 1.2125 7 6 2.0082 -1.2088 0.0005 8 1 3.0882 -1.2088 0.0010 9 7 1.3275 -2.3877 0.0005 10 6 2.0014 -3.5549 0.0005 11 8 3.2164 -3.5549 0.0001 12 6 1.2573 -4.8438 0.0000 13 8 0.0429 -4.8439 0.0000 14 7 1.9312 -6.0110 -0.0006 15 6 1.1987 -7.2797 -0.0006 16 6 1.9968 -8.4519 0.5943 17 6 1.4087 -9.3203 -0.5302 18 8 2.3453 -10.2427 -1.0906 19 6 1.2573 -8.0248 -1.3446 20 1 -0.4850 0.8400 -0.0004 21 1 0.3576 -2.3877 -0.0002 22 1 2.9013 -6.0109 -0.0009 23 1 0.1909 -7.1878 0.4041 24 1 1.6658 -8.7445 1.5907 25 1 3.0772 -8.3233 0.5270 26 1 0.4589 -9.7875 -0.2697 27 1 1.9811 -10.7920 -1.7982 28 1 2.1353 -7.7794 -1.9419 29 1 0.3290 -7.9726 -1.9135 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084444796.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:01 Heat of formation + Delta-G solvation = -131.322609 kcal Electronic energy + Delta-G solvation = -15380.742982 eV Core-core repulsion = 12496.387100 eV Total energy + Delta-G solvation = -2884.355882 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.50823 -40.16055 -38.86586 -36.58700 -36.12282 -33.91950 -33.33894 -28.07038 -26.76613 -26.01936 -23.71229 -21.41720 -20.84619 -20.29680 -18.87654 -18.48596 -17.62353 -16.81427 -16.59345 -16.43148 -15.94703 -15.65337 -15.03197 -14.75267 -14.35594 -13.74770 -13.62821 -13.49216 -12.98953 -12.70089 -12.59036 -12.39287 -12.21193 -12.08685 -11.69020 -11.63119 -10.82786 -10.29165 -10.24342 -10.13905 -8.67521 -6.12446 0.57035 1.40833 1.45215 1.56727 1.81283 2.28742 2.34531 3.13213 3.19973 3.36715 3.51232 3.69183 3.82944 3.93376 4.04023 4.49419 4.73551 4.75970 4.94645 4.98243 5.10973 5.24242 5.44718 5.67301 6.15737 6.37440 6.79664 6.92779 7.00078 7.26467 7.78402 8.48556 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.075922 B = 0.004956 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.710097 B = 5648.226755 C = 5855.582463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.345 4.345 8 H 0.098 0.902 9 N -0.510 5.510 10 C 0.387 3.613 11 O -0.618 6.618 12 C 0.521 3.479 13 O -0.565 6.565 14 N -0.683 5.683 15 C 0.108 3.892 16 C -0.132 4.132 17 C 0.095 3.905 18 O -0.574 6.574 19 C -0.181 4.181 20 H 0.289 0.711 21 H 0.401 0.599 22 H 0.415 0.585 23 H 0.114 0.886 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.398 0.602 28 H 0.084 0.916 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 -14.633 -1.100 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.475 4.475 8 H 0.116 0.884 9 N -0.144 5.144 10 C 0.172 3.828 11 O -0.508 6.508 12 C 0.304 3.696 13 O -0.444 6.444 14 N -0.335 5.335 15 C 0.004 3.996 16 C -0.170 4.170 17 C 0.036 3.964 18 O -0.382 6.382 19 C -0.220 4.220 20 H 0.099 0.901 21 H 0.236 0.764 22 H 0.252 0.748 23 H 0.132 0.868 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.131 0.869 27 H 0.248 0.752 28 H 0.103 0.897 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.558 -14.246 -0.661 14.273 hybrid contribution -0.239 0.665 -0.467 0.847 sum 0.319 -13.582 -1.128 13.632 Atomic orbital electron populations 1.69552 1.07816 1.30804 1.45127 1.26556 0.96528 1.03502 0.94360 0.84631 0.78241 0.75208 0.78766 1.18807 1.19021 1.19005 1.20021 0.93680 0.83079 1.50708 0.88374 1.41667 1.10252 1.04802 1.57678 1.19658 0.87888 0.85322 0.89903 1.90548 1.13879 1.87307 1.59059 1.20087 0.87059 0.85993 0.76458 1.90666 1.14468 1.88275 1.51014 1.45612 1.11187 1.04192 1.72523 1.22538 0.97672 0.80660 0.98769 1.23453 1.01262 0.92693 0.99578 1.23038 0.93153 0.87055 0.93179 1.86477 1.40766 1.54175 1.56823 1.24197 1.03316 0.97273 0.97248 0.90053 0.76437 0.74765 0.86834 0.88353 0.88972 0.86855 0.75202 0.89724 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.19 13.03 21.76 0.28 -47.91 15 2 C -0.01 -0.27 5.51 85.14 0.47 0.20 15 3 Si 1.01 40.87 29.56 68.60 2.03 42.89 15 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 5 H -0.27 -10.19 7.11 99.48 0.71 -9.49 15 6 H -0.27 -10.18 7.11 99.48 0.71 -9.48 15 7 C -0.35 -19.56 9.67 84.35 0.82 -18.74 15 8 H 0.10 5.73 7.15 -2.91 -0.02 5.71 15 9 N -0.51 -28.24 5.25 -308.87 -1.62 -29.86 15 10 C 0.39 20.10 7.82 87.08 0.68 20.78 15 11 O -0.62 -34.06 16.03 -3.72 -0.06 -34.12 15 12 C 0.52 22.87 7.87 87.08 0.69 23.55 15 13 O -0.57 -26.50 16.07 -3.51 -0.06 -26.56 15 14 N -0.68 -23.20 5.35 -441.97 -2.36 -25.56 15 15 C 0.11 2.78 4.24 45.52 0.19 2.98 15 16 C -0.13 -2.59 7.66 31.12 0.24 -2.35 15 17 C 0.10 1.57 5.21 31.12 0.16 1.74 15 18 O -0.57 -9.68 13.67 -148.98 -2.04 -11.72 15 19 C -0.18 -3.90 7.71 31.12 0.24 -3.66 15 20 H 0.29 14.18 8.30 -92.71 -0.77 13.41 15 21 H 0.40 22.37 7.35 -92.71 -0.68 21.68 15 22 H 0.42 13.50 8.19 -92.70 -0.76 12.74 15 23 H 0.11 3.07 7.47 -2.39 -0.02 3.06 15 24 H 0.10 1.62 8.14 -2.39 -0.02 1.60 15 25 H 0.09 1.93 8.12 -2.39 -0.02 1.91 15 26 H 0.11 1.30 8.14 -2.39 -0.02 1.29 15 27 H 0.40 3.07 9.12 -74.06 -0.68 2.40 15 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 15 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 15 Total: -1.00 -68.59 264.21 -1.24 -69.83 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: -0.90 Total: 38.52 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 3.48 Total: 24.48 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -3.70 Total: -103.33 kcal Atomic # 8 Polarization: -70.25 SS G_CDS: -2.15 Total: -72.40 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -68.59 -1.24 -69.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084444796.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.489 kcal (2) G-P(sol) polarization free energy of solvation -68.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds