Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46775 * 2 1 4 4 C 1.50697 * 109.47263 * 119.99950 * 2 1 3 5 5 C 1.39857 * 126.04869 * 299.97729 * 4 2 1 6 6 N 1.30843 * 108.21826 * 180.02562 * 5 4 2 7 7 N 1.40082 * 108.23747 * 0.02562 * 6 5 4 8 8 C 1.46491 * 126.03880 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46957 * 90.02245 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.34987 * 107.92522 * 0.26257 * 7 6 5 18 18 Cl 1.73605 * 126.14102 * 179.72084 * 17 7 6 19 19 H 1.09002 * 109.47690 * 60.00308 * 1 2 3 20 20 H 1.09004 * 109.46756 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47548 * 300.00005 * 1 2 3 22 22 H 1.08997 * 109.47150 * 240.00624 * 2 1 3 23 23 H 1.09005 * 109.46852 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.47414 * 299.99890 * 3 2 1 25 25 H 1.08999 * 109.47262 * 60.00228 * 3 2 1 26 26 H 1.07996 * 125.89416 * 0.05621 * 5 4 2 27 27 H 1.09004 * 109.47166 * 330.02511 * 8 7 6 28 28 H 1.08994 * 109.47507 * 210.02217 * 8 7 6 29 29 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7740 -0.3442 2.5553 6 7 2.3784 -1.1983 3.3410 7 7 3.0424 -2.1366 2.5404 8 6 3.8425 -3.2662 3.0198 9 6 2.9573 -4.4747 3.1842 10 1 1.9042 -4.4081 2.9542 11 6 3.4931 -5.6672 3.6224 12 7 4.7756 -5.7484 3.9022 13 14 2.3974 -7.1672 3.8189 14 1 1.7859 -7.5085 2.5093 15 1 3.2094 -8.3137 4.3003 16 1 1.3258 -6.8721 4.8037 17 6 2.8201 -1.8123 1.2490 18 17 3.4301 -2.6583 -0.1388 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5137 -0.8900 23 1 3.1299 1.4425 -0.0005 24 1 1.6765 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.1780 0.4978 2.8748 27 1 4.2919 -3.0117 3.9797 28 1 4.6285 -3.4871 2.2978 29 1 5.1525 -6.5873 4.2108 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108309017.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = 46.821687 kcal Electronic energy + Delta-G solvation = -13660.733678 eV Core-core repulsion = 11224.811876 eV Total energy + Delta-G solvation = -2435.921801 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.61581 -36.19761 -35.40986 -33.49473 -31.35940 -28.87233 -26.89924 -26.87639 -23.32765 -22.00525 -20.22875 -19.06297 -16.78122 -16.25125 -14.80575 -14.50431 -14.37582 -14.04078 -13.32122 -12.90991 -12.88331 -12.28421 -11.99351 -11.87127 -11.41770 -11.32092 -11.14098 -10.91500 -10.83765 -10.71044 -10.51568 -10.22846 -9.87106 -9.84662 -8.65014 -8.49186 -7.71237 -6.27259 -4.34533 2.20648 2.47867 3.23404 3.24030 3.26917 3.30504 3.64043 4.29549 4.97317 5.09210 5.21174 5.48380 5.52533 5.81433 5.88878 5.90089 5.99518 6.03252 6.22982 6.38242 6.50116 6.62538 6.84458 6.96474 7.25192 7.56530 7.76324 7.84312 8.37110 8.69524 9.31387 10.80963 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.037293 B = 0.007646 C = 0.007428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.636160 B = 3661.230737 C = 3768.844898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.014 4.014 3 C -0.138 4.138 4 C -0.238 4.238 5 C 0.034 3.966 6 N -0.276 5.276 7 N -0.318 5.318 8 C 0.252 3.748 9 C -0.536 4.536 10 H 0.064 0.936 11 C 0.067 3.933 12 N -0.891 5.891 13 Si 0.907 3.093 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.274 1.274 17 C 0.133 3.867 18 Cl -0.018 7.018 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.176 0.824 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 9.641 -7.823 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.196 4.196 4 C -0.251 4.251 5 C -0.149 4.149 6 N -0.100 5.100 7 N -0.100 5.100 8 C 0.135 3.865 9 C -0.574 4.574 10 H 0.082 0.918 11 C -0.136 4.136 12 N -0.528 5.528 13 Si 0.734 3.266 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.199 1.199 17 C -0.025 4.025 18 Cl 0.010 6.990 19 H 0.069 0.931 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.193 0.807 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.092 8.956 -6.586 11.846 hybrid contribution -0.545 -0.857 -0.745 1.259 sum -4.638 8.099 -7.331 11.868 Atomic orbital electron populations 1.21799 0.95092 1.01727 1.01034 1.19341 0.94993 0.94874 0.94196 1.21801 1.01032 0.95686 1.01077 1.19436 1.09446 1.00288 0.95933 1.23346 1.01255 0.99667 0.90626 1.77499 1.12721 1.01545 1.18239 1.49596 1.36977 1.22207 1.01248 1.19825 0.89859 0.79587 0.97226 1.21195 0.95496 0.93905 1.46847 0.91784 1.24908 0.95310 0.98906 0.94501 1.69911 1.11472 1.27312 1.44142 0.86399 0.80209 0.81162 0.78849 1.19881 1.20902 1.19901 1.21427 1.01823 0.95832 0.83388 1.98351 1.86581 1.77458 1.36583 0.93097 0.92754 0.92751 0.90982 0.92878 0.93098 0.92743 0.80736 0.92567 0.92634 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.08 37.16 0.34 -1.34 15 2 C -0.01 -0.20 3.26 -91.78 -0.30 -0.50 15 3 C -0.14 -1.60 9.08 37.16 0.34 -1.26 15 4 C -0.24 -4.17 4.80 -105.01 -0.50 -4.68 15 5 C 0.03 0.62 11.45 -17.37 -0.20 0.42 15 6 N -0.28 -6.11 12.57 30.62 0.39 -5.73 15 7 N -0.32 -7.42 3.60 -59.33 -0.21 -7.64 15 8 C 0.25 6.54 6.04 -5.20 -0.03 6.51 15 9 C -0.54 -14.88 9.39 -34.44 -0.32 -15.20 15 10 H 0.06 1.82 7.81 -52.49 -0.41 1.41 15 11 C 0.07 1.85 5.46 -17.82 -0.10 1.76 15 12 N -0.89 -25.26 13.29 55.43 0.74 -24.53 15 13 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 15 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 17 C 0.13 2.71 7.45 -17.15 -0.13 2.59 15 18 Cl -0.02 -0.33 27.98 -51.86 -1.45 -1.78 15 19 H 0.05 0.51 8.14 -51.93 -0.42 0.09 15 20 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 21 H 0.05 0.62 8.02 -51.93 -0.42 0.20 15 22 H 0.07 1.00 7.39 -51.93 -0.38 0.61 15 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 15 25 H 0.05 0.59 8.02 -51.93 -0.42 0.18 15 26 H 0.18 2.44 8.06 -52.49 -0.42 2.02 15 27 H 0.06 1.54 8.14 -51.93 -0.42 1.12 15 28 H 0.06 1.46 7.79 -51.93 -0.40 1.05 15 29 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 LS Contribution 270.42 15.07 4.08 4.08 Total: -1.00 -28.85 270.42 -6.10 -34.95 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -3.70 Total: -3.91 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -0.91 Total: -11.71 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.91 Total: -37.89 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.45 Total: -1.78 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.85 -6.10 -34.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108309017.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.775 kcal (2) G-P(sol) polarization free energy of solvation -28.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds