Wall clock time and date at job start Mon Mar 30 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46775 * 2 1 4 4 C 1.50697 * 109.47263 * 119.99950 * 2 1 3 5 5 C 1.39857 * 126.04869 * 299.97729 * 4 2 1 6 6 N 1.30843 * 108.21826 * 180.02562 * 5 4 2 7 7 N 1.40082 * 108.23747 * 0.02562 * 6 5 4 8 8 C 1.46491 * 126.03880 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46957 * 90.02245 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.34987 * 107.92522 * 0.26257 * 7 6 5 18 18 Cl 1.73605 * 126.14102 * 179.72084 * 17 7 6 19 19 H 1.09002 * 109.47690 * 60.00308 * 1 2 3 20 20 H 1.09004 * 109.46756 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47548 * 300.00005 * 1 2 3 22 22 H 1.08997 * 109.47150 * 240.00624 * 2 1 3 23 23 H 1.09005 * 109.46852 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.47414 * 299.99890 * 3 2 1 25 25 H 1.08999 * 109.47262 * 60.00228 * 3 2 1 26 26 H 1.07996 * 125.89416 * 0.05621 * 5 4 2 27 27 H 1.09004 * 109.47166 * 330.02511 * 8 7 6 28 28 H 1.08994 * 109.47507 * 210.02217 * 8 7 6 29 29 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7740 -0.3442 2.5553 6 7 2.3784 -1.1983 3.3410 7 7 3.0424 -2.1366 2.5404 8 6 3.8425 -3.2662 3.0198 9 6 2.9573 -4.4747 3.1842 10 1 1.9042 -4.4081 2.9542 11 6 3.4931 -5.6672 3.6224 12 7 4.7756 -5.7484 3.9022 13 14 2.3974 -7.1672 3.8189 14 1 1.7859 -7.5085 2.5093 15 1 3.2094 -8.3137 4.3003 16 1 1.3258 -6.8721 4.8037 17 6 2.8201 -1.8123 1.2490 18 17 3.4301 -2.6583 -0.1388 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5137 -0.8900 23 1 3.1299 1.4425 -0.0005 24 1 1.6765 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.1780 0.4978 2.8748 27 1 4.2919 -3.0117 3.9797 28 1 4.6285 -3.4871 2.2978 29 1 5.1525 -6.5873 4.2108 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108309017.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:30 Heat of formation + Delta-G solvation = 30.221889 kcal Electronic energy + Delta-G solvation = -13661.453499 eV Core-core repulsion = 11224.811876 eV Total energy + Delta-G solvation = -2436.641623 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.17047 -37.71463 -36.69340 -35.40611 -33.16525 -30.42799 -28.71735 -27.80820 -25.26418 -23.27966 -21.88043 -20.44102 -18.85689 -17.89037 -16.57850 -16.09929 -15.76836 -15.44085 -14.73999 -14.40667 -14.28295 -13.72357 -13.69785 -13.10492 -12.95181 -12.83620 -12.78917 -12.62388 -12.35085 -11.98234 -11.84937 -11.79626 -11.72842 -11.25010 -10.75826 -10.19158 -9.24645 -8.36457 -6.53324 0.66123 0.88690 1.36271 1.38299 1.46931 1.81546 1.93904 2.33358 2.94619 3.68566 4.11279 4.32315 4.40111 4.48906 4.68364 4.79775 4.84061 4.98062 5.01716 5.14740 5.22318 5.32584 5.47389 5.56703 5.58184 5.75633 5.80492 5.94283 6.53947 6.80012 7.17101 8.71005 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.037293 B = 0.007646 C = 0.007428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.636160 B = 3661.230737 C = 3768.844898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.016 4.016 3 C -0.134 4.134 4 C -0.220 4.220 5 C 0.050 3.950 6 N -0.317 5.317 7 N -0.350 5.350 8 C 0.271 3.729 9 C -0.552 4.552 10 H 0.051 0.949 11 C 0.023 3.977 12 N -0.919 5.919 13 Si 0.971 3.029 14 H -0.267 1.267 15 H -0.272 1.272 16 H -0.271 1.271 17 C 0.108 3.892 18 Cl -0.009 7.009 19 H 0.076 0.924 20 H 0.037 0.963 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.219 0.781 27 H 0.029 0.971 28 H 0.043 0.957 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.276 10.588 -8.751 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.036 4.036 3 C -0.192 4.192 4 C -0.233 4.233 5 C -0.134 4.134 6 N -0.141 5.141 7 N -0.133 5.133 8 C 0.152 3.848 9 C -0.590 4.590 10 H 0.069 0.931 11 C -0.179 4.179 12 N -0.557 5.557 13 Si 0.794 3.206 14 H -0.192 1.192 15 H -0.197 1.197 16 H -0.196 1.196 17 C -0.047 4.047 18 Cl 0.019 6.981 19 H 0.095 0.905 20 H 0.056 0.944 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.235 0.765 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.723 9.919 -7.537 13.709 hybrid contribution -0.064 -1.028 -0.515 1.152 sum -5.787 8.890 -8.052 13.318 Atomic orbital electron populations 1.21780 0.93413 1.01258 1.02884 1.19513 0.96290 0.95817 0.91948 1.21772 1.00382 0.94150 1.02873 1.20006 1.07139 0.98767 0.97415 1.24101 0.99645 0.99321 0.90348 1.77436 1.14250 1.02627 1.19759 1.49297 1.38788 1.22749 1.02433 1.19263 0.89729 0.80337 0.95511 1.21343 0.95071 0.95167 1.47455 0.93085 1.25751 0.96646 1.01663 0.93797 1.70002 1.12937 1.28295 1.44423 0.85410 0.78456 0.77696 0.78997 1.19160 1.19679 1.19641 1.21910 1.02896 0.97013 0.82876 1.98342 1.86581 1.77485 1.35701 0.90493 0.94387 0.91745 0.91242 0.93940 0.90601 0.91723 0.76475 0.95340 0.93879 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.08 71.98 0.65 -2.16 15 2 C -0.02 -0.39 3.26 -11.54 -0.04 -0.43 15 3 C -0.13 -2.63 9.08 71.98 0.65 -1.98 15 4 C -0.22 -7.39 4.80 -20.11 -0.10 -7.49 15 5 C 0.05 1.69 11.45 85.23 0.98 2.67 15 6 N -0.32 -14.08 12.57 -57.03 -0.72 -14.80 15 7 N -0.35 -16.70 3.60 -341.61 -1.23 -17.93 15 8 C 0.27 14.62 6.04 85.64 0.52 15.13 15 9 C -0.55 -31.45 9.39 25.60 0.24 -31.21 15 10 H 0.05 2.97 7.81 -2.91 -0.02 2.95 15 11 C 0.02 1.25 5.46 84.66 0.46 1.72 15 12 N -0.92 -52.91 13.29 21.45 0.28 -52.62 15 13 Si 0.97 43.61 29.54 68.60 2.03 45.64 15 14 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 15 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 17 C 0.11 4.43 7.45 83.57 0.62 5.06 15 18 Cl -0.01 -0.34 27.98 -2.72 -0.08 -0.41 15 19 H 0.08 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.04 0.91 8.14 -2.38 -0.02 0.89 15 21 H 0.06 1.21 8.02 -2.39 -0.02 1.19 15 22 H 0.07 1.76 7.39 -2.39 -0.02 1.75 15 23 H 0.04 0.92 8.14 -2.38 -0.02 0.90 15 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 15 25 H 0.06 1.14 8.02 -2.39 -0.02 1.12 15 26 H 0.22 5.25 8.06 -2.91 -0.02 5.23 15 27 H 0.03 1.65 8.14 -2.38 -0.02 1.64 15 28 H 0.04 2.38 7.79 -2.39 -0.02 2.36 15 29 H 0.27 14.73 8.31 -92.70 -0.77 13.96 15 Total: -1.00 -63.08 270.42 5.41 -57.67 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.13 Total: 1.16 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 3.99 Total: -18.70 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -1.66 Total: -85.36 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.41 kcal Total: -63.08 5.41 -57.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108309017.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.891 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds