Wall clock time and date at job start Mon Mar 30 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35704 * 117.00176 * 2 1 4 4 C 1.38656 * 120.27716 * 270.27944 * 3 2 1 5 5 F 1.35096 * 119.99289 * 0.02562 * 4 3 2 6 6 C 1.38451 * 120.00934 * 180.29892 * 4 3 2 7 7 C 1.38830 * 120.56771 * 359.71841 * 6 4 3 8 8 C 1.50699 * 119.72186 * 179.97438 * 7 6 4 9 9 F 1.39900 * 109.47405 * 269.98250 * 8 7 6 10 10 C 1.36464 * 120.55869 * 359.97438 * 7 6 4 11 11 C 1.40772 * 119.96632 * 0.02562 * 10 7 6 12 12 C 1.41159 * 120.27769 * 180.02562 * 11 10 7 13 13 H 1.08002 * 120.00384 * 205.36736 * 12 11 10 14 14 C 1.39931 * 120.00119 * 25.37307 * 12 11 10 15 15 N 1.30872 * 120.00002 * 17.09084 * 14 12 11 16 16 Si 1.86799 * 120.00181 * 197.10171 * 14 12 11 17 17 H 1.48503 * 109.46968 * 265.18243 * 16 14 12 18 18 H 1.48498 * 109.47030 * 25.17882 * 16 14 12 19 19 H 1.48495 * 109.47470 * 145.18347 * 16 14 12 20 20 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47069 * 299.99714 * 1 2 3 22 22 H 1.08996 * 109.47402 * 59.99491 * 1 2 3 23 23 H 1.08005 * 119.71484 * 179.74011 * 6 4 3 24 24 H 1.09003 * 109.46951 * 29.98352 * 8 7 6 25 25 H 1.08997 * 109.47052 * 149.98027 * 8 7 6 26 26 H 1.07994 * 120.02043 * 180.02562 * 10 7 6 27 27 H 0.96999 * 120.00016 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.3573 1.8346 -1.1974 5 9 2.0476 1.2405 -2.3705 6 6 2.9915 3.0653 -1.1910 7 6 3.3151 3.6866 0.0076 8 6 4.0058 5.0259 -0.0076 9 9 5.3918 4.8358 -0.0150 10 6 3.0130 3.0947 1.1996 11 6 2.3683 1.8435 1.2199 12 6 2.0523 1.2255 2.4491 13 1 1.9498 0.1517 2.5031 14 6 1.8715 2.0042 3.5976 15 7 1.6617 3.2915 3.4891 16 14 1.9300 1.2065 5.2856 17 1 0.5510 0.8702 5.7222 18 1 2.7443 -0.0335 5.2192 19 1 2.5410 2.1485 6.2575 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 3.2362 3.5464 -2.1265 24 1 3.7099 5.5771 -0.9002 25 1 3.7214 5.5915 0.8797 26 1 3.2683 3.5859 2.1268 27 1 1.5361 3.8312 4.2852 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214865108.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:27 Heat of formation + Delta-G solvation = -127.372194 kcal Electronic energy + Delta-G solvation = -15691.673703 eV Core-core repulsion = 12664.108857 eV Total energy + Delta-G solvation = -3027.564846 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.80762 -46.99813 -38.35485 -36.21057 -33.97801 -30.54990 -29.39533 -26.58816 -25.76565 -24.36568 -21.48813 -20.25949 -17.66549 -16.54414 -16.15346 -15.60640 -15.26499 -15.17224 -14.80115 -14.48195 -14.18389 -13.93384 -13.48632 -13.06391 -12.62047 -12.03033 -11.78051 -11.29300 -11.16090 -10.95881 -10.80137 -10.60274 -10.43484 -10.33214 -9.75006 -9.40304 -8.80619 -7.69033 -7.43452 -7.04558 -4.62994 2.31124 2.53239 2.95499 2.97014 3.04646 3.75356 4.21913 4.82270 5.21823 5.34685 5.47742 5.52273 5.73950 6.07141 6.13145 6.28636 6.33421 6.36616 6.66059 6.74311 6.91390 7.14408 7.27221 7.57759 7.66822 7.91916 8.16096 8.44000 8.55387 8.89162 9.87777 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.012503 C = 0.008134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.204324 B = 2238.835983 C = 3441.483932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.319 6.319 3 C -0.065 4.065 4 C 0.109 3.891 5 F -0.159 7.159 6 C -0.254 4.254 7 C -0.101 4.101 8 C 0.114 3.886 9 F -0.221 7.221 10 C -0.134 4.134 11 C 0.114 3.886 12 C -0.432 4.432 13 H 0.091 0.909 14 C 0.073 3.927 15 N -0.782 5.782 16 Si 0.915 3.085 17 H -0.268 1.268 18 H -0.256 1.256 19 H -0.272 1.272 20 H 0.074 0.926 21 H 0.045 0.955 22 H 0.028 0.972 23 H 0.106 0.894 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.129 0.871 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 1.511 -0.571 1.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.236 6.236 3 C -0.111 4.111 4 C 0.089 3.911 5 F -0.138 7.138 6 C -0.275 4.275 7 C -0.102 4.102 8 C 0.059 3.941 9 F -0.202 7.202 10 C -0.154 4.154 11 C 0.111 3.889 12 C -0.460 4.460 13 H 0.109 0.891 14 C -0.147 4.147 15 N -0.406 5.406 16 Si 0.739 3.261 17 H -0.193 1.193 18 H -0.180 1.180 19 H -0.197 1.197 20 H 0.092 0.908 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.124 0.876 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.147 0.853 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.708 1.529 -0.461 1.747 hybrid contribution -0.325 -0.130 0.488 0.601 sum -1.033 1.399 0.027 1.740 Atomic orbital electron populations 1.22811 0.82551 1.00923 0.99797 1.85988 1.17923 1.25537 1.94129 1.18566 1.09641 0.91970 0.90904 1.17832 1.01270 0.92313 0.79669 1.91335 1.91587 1.83959 1.46881 1.19986 1.13296 0.96832 0.97350 1.19308 1.01101 0.96073 0.93756 1.20742 0.74916 0.95681 1.02782 1.92746 1.32546 1.96786 1.98151 1.20953 1.00669 0.97416 0.96328 1.17646 0.89028 0.90794 0.91441 1.19606 1.39226 0.95766 0.91398 0.89129 1.26067 0.91843 0.94645 1.02135 1.69808 1.31537 1.06680 1.32589 0.86157 0.79609 0.80436 0.79902 1.19281 1.17992 1.19722 0.90770 0.93636 0.95359 0.87584 0.91182 0.90451 0.85314 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.13 101.05 1.12 1.81 15 2 O -0.32 -7.77 9.58 -18.82 -0.18 -7.95 15 3 C -0.06 -1.66 5.77 -38.29 -0.22 -1.88 15 4 C 0.11 2.64 7.30 -39.35 -0.29 2.35 15 5 F -0.16 -3.71 17.11 2.25 0.04 -3.67 15 6 C -0.25 -5.75 9.66 -39.28 -0.38 -6.13 15 7 C -0.10 -2.27 5.56 -105.04 -0.58 -2.85 15 8 C 0.11 2.07 7.65 36.00 0.28 2.34 15 9 F -0.22 -4.35 17.34 2.25 0.04 -4.31 15 10 C -0.13 -3.30 8.25 -39.26 -0.32 -3.62 15 11 C 0.11 2.97 5.58 -106.69 -0.59 2.37 15 12 C -0.43 -10.94 8.72 -37.84 -0.33 -11.27 15 13 H 0.09 2.29 7.66 -52.49 -0.40 1.88 15 14 C 0.07 1.70 5.15 -17.33 -0.09 1.62 15 15 N -0.78 -18.49 10.97 55.55 0.61 -17.88 15 16 Si 0.92 17.54 29.59 -169.99 -5.03 12.51 15 17 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 18 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 20 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 21 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.11 2.14 8.06 -52.48 -0.42 1.72 15 24 H 0.07 1.08 8.08 -51.93 -0.42 0.66 15 25 H 0.08 1.29 8.07 -51.93 -0.42 0.87 15 26 H 0.13 3.18 6.19 -52.49 -0.33 2.85 15 27 H 0.29 6.09 8.30 -40.82 -0.34 5.75 15 LS Contribution 251.47 15.07 3.79 3.79 Total: -1.00 -26.93 251.47 -4.53 -31.47 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -2.39 Total: 1.29 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.41 Total: -15.25 kcal Atomic # 7 Polarization: -18.49 SS G_CDS: 0.61 Total: -17.88 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.18 Total: -7.95 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 0.08 Total: -7.98 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.93 -4.53 -31.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214865108.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.907 kcal (2) G-P(sol) polarization free energy of solvation -26.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds