Wall clock time and date at job start Mon Mar 30 2020 03:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00481 * 2 1 4 4 C 1.39158 * 119.92711 * 359.97438 * 3 2 1 5 5 C 1.38522 * 120.44145 * 180.02562 * 4 3 2 6 6 C 1.37667 * 120.30825 * 359.69329 * 5 4 3 7 7 C 1.40736 * 119.84897 * 0.55570 * 6 5 4 8 8 C 1.41404 * 120.21266 * 179.74326 * 7 6 5 9 9 H 1.08006 * 119.99478 * 143.18840 * 8 7 6 10 10 C 1.39933 * 120.00366 * 322.91606 * 8 7 6 11 11 N 1.30830 * 120.00254 * 167.18448 * 10 8 7 12 12 Si 1.86799 * 119.99885 * 347.17721 * 10 8 7 13 13 H 1.48494 * 109.47139 * 86.68303 * 12 10 8 14 14 H 1.48507 * 109.47288 * 206.68688 * 12 10 8 15 15 H 1.48505 * 109.47149 * 326.68472 * 12 10 8 16 16 C 1.38090 * 119.93461 * 179.97438 * 3 2 1 17 17 C 1.50699 * 120.15756 * 359.97438 * 16 3 2 18 18 F 1.39902 * 109.46570 * 23.46699 * 17 16 3 19 19 F 1.39891 * 109.47282 * 143.46580 * 17 16 3 20 20 H 1.09002 * 109.46779 * 60.00110 * 1 2 3 21 21 H 1.08997 * 109.47349 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47012 * 300.00127 * 1 2 3 23 23 H 1.07998 * 119.78423 * 0.02562 * 4 3 2 24 24 H 1.08001 * 119.84587 * 179.97438 * 5 4 3 25 25 H 1.07995 * 120.07691 * 180.30739 * 6 5 4 26 26 H 0.96993 * 120.00108 * 179.97438 * 11 10 8 27 27 H 1.09006 * 109.47167 * 263.47208 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2868 2.3770 -0.0005 5 6 1.9047 3.6168 -0.0011 6 6 3.2783 3.7085 0.0053 7 6 4.0585 2.5372 0.0005 8 6 5.4699 2.6224 0.0015 9 1 6.0538 1.9050 0.5591 10 6 6.1105 3.6327 -0.7245 11 7 7.3821 3.8718 -0.5309 12 14 5.1499 4.6401 -1.9703 13 1 4.5029 5.7879 -1.2855 14 1 6.0743 5.1451 -3.0171 15 1 4.1087 3.7878 -2.5988 16 6 3.4252 1.2814 0.0005 17 6 4.2479 0.0188 0.0017 18 9 3.4888 -1.0327 -0.5232 19 9 5.3907 0.2061 -0.7831 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2086 2.3151 -0.0005 24 1 1.3060 4.5157 -0.0019 25 1 3.7560 4.6770 0.0098 26 1 7.8261 4.5718 -1.0344 27 1 4.5437 -0.2212 1.0230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214867408.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:08 Heat of formation + Delta-G solvation = -122.297458 kcal Electronic energy + Delta-G solvation = -16102.647455 eV Core-core repulsion = 13075.302665 eV Total energy + Delta-G solvation = -3027.344789 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.77715 -45.77652 -39.09403 -36.65627 -33.49389 -31.09863 -29.81079 -26.84077 -25.84215 -24.13709 -21.19162 -20.33085 -18.06453 -16.65145 -16.18385 -16.13169 -15.76515 -15.03803 -15.00169 -14.80784 -13.81933 -13.26164 -12.76388 -12.60064 -12.34617 -12.15105 -12.08540 -11.65563 -11.52164 -11.13498 -10.93845 -10.76675 -10.29611 -10.13369 -9.94888 -9.46538 -9.18850 -7.83220 -7.28235 -6.99000 -4.61930 2.31511 2.54150 3.08150 3.17224 3.28829 3.94369 3.98690 4.38678 4.92917 5.15775 5.40437 5.49755 5.54706 5.71974 5.81182 5.89273 6.08911 6.24165 6.39913 6.58131 6.79842 7.14112 7.31158 7.41298 7.57009 7.70491 8.18597 8.30026 8.44435 8.67659 10.02321 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.029754 B = 0.012487 C = 0.009523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.824947 B = 2241.869054 C = 2939.670703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.313 6.313 3 C 0.187 3.813 4 C -0.326 4.326 5 C -0.038 4.038 6 C -0.258 4.258 7 C 0.138 3.862 8 C -0.429 4.429 9 H 0.099 0.901 10 C 0.087 3.913 11 N -0.802 5.802 12 Si 0.912 3.088 13 H -0.266 1.266 14 H -0.289 1.289 15 H -0.248 1.248 16 C -0.299 4.299 17 C 0.338 3.662 18 F -0.210 7.210 19 F -0.194 7.194 20 H 0.048 0.952 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.111 0.889 26 H 0.287 0.713 27 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.123 -2.368 0.409 8.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.227 6.227 3 C 0.142 3.858 4 C -0.346 4.346 5 C -0.056 4.056 6 C -0.277 4.277 7 C 0.134 3.866 8 C -0.457 4.457 9 H 0.116 0.884 10 C -0.132 4.132 11 N -0.426 5.426 12 Si 0.738 3.262 13 H -0.191 1.191 14 H -0.216 1.216 15 H -0.171 1.171 16 C -0.302 4.302 17 C 0.284 3.716 18 F -0.191 7.191 19 F -0.175 7.175 20 H 0.066 0.934 21 H 0.106 0.894 22 H 0.066 0.934 23 H 0.124 0.876 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.098 0.902 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.734 -2.481 0.343 8.129 hybrid contribution -0.544 0.697 -0.611 1.075 sum -8.278 -1.784 -0.268 8.472 Atomic orbital electron populations 1.22860 0.80219 1.02440 1.00773 1.86169 1.19932 1.27791 1.88773 1.18478 0.90898 0.83482 0.92928 1.20450 0.97804 0.92124 1.24186 1.20502 0.94453 0.95677 0.94974 1.21152 0.93329 0.97857 1.15388 1.17197 0.93588 0.89044 0.86782 1.19513 0.89795 1.10926 1.25456 0.88351 1.26072 0.95071 0.95086 0.96992 1.69636 1.11177 1.26807 1.34941 0.86329 0.79830 0.80305 0.79751 1.19129 1.21557 1.17121 1.19544 0.89913 0.94768 1.25936 1.19682 0.77787 0.83190 0.90930 1.92925 1.77056 1.59911 1.89204 1.92995 1.51355 1.95483 1.77715 0.93359 0.89397 0.93368 0.87639 0.88167 0.87174 0.90216 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 15 2 O -0.31 -6.23 8.19 -19.43 -0.16 -6.39 15 3 C 0.19 4.14 6.58 -39.29 -0.26 3.88 15 4 C -0.33 -6.68 9.05 -39.14 -0.35 -7.04 15 5 C -0.04 -0.79 10.02 -39.69 -0.40 -1.19 15 6 C -0.26 -6.06 7.26 -38.85 -0.28 -6.35 15 7 C 0.14 3.47 4.94 -106.84 -0.53 2.94 15 8 C -0.43 -11.40 7.54 -37.74 -0.28 -11.69 15 9 H 0.10 2.73 7.17 -52.48 -0.38 2.35 15 10 C 0.09 2.27 5.44 -17.34 -0.09 2.17 15 11 N -0.80 -21.07 13.93 55.55 0.77 -20.30 15 12 Si 0.91 20.76 24.69 -169.99 -4.20 16.56 15 13 H -0.27 -5.74 6.45 56.52 0.36 -5.37 15 14 H -0.29 -6.31 7.11 56.52 0.40 -5.91 15 15 H -0.25 -5.91 7.10 56.52 0.40 -5.51 15 16 C -0.30 -7.17 5.79 -103.77 -0.60 -7.77 15 17 C 0.34 7.57 5.20 36.00 0.19 7.75 15 18 F -0.21 -4.62 15.05 2.25 0.03 -4.59 15 19 F -0.19 -4.75 14.71 2.25 0.03 -4.72 15 20 H 0.05 0.66 7.65 -51.93 -0.40 0.26 15 21 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 22 H 0.05 0.63 7.65 -51.93 -0.40 0.24 15 23 H 0.11 1.84 6.27 -52.49 -0.33 1.51 15 24 H 0.10 1.78 8.06 -52.49 -0.42 1.36 15 25 H 0.11 2.54 5.10 -52.49 -0.27 2.28 15 26 H 0.29 6.84 8.30 -40.82 -0.34 6.50 15 27 H 0.09 1.78 8.14 -51.93 -0.42 1.36 15 LS Contribution 235.34 15.07 3.55 3.55 Total: -1.00 -28.25 235.34 -3.80 -32.04 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -2.21 Total: -0.34 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -1.62 Total: -15.81 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.77 Total: -20.30 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.16 Total: -6.39 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.20 Total: 16.56 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.25 -3.80 -32.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214867408.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.254 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds