Wall clock time and date at job start Mon Mar 30 2020 03:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86804 * 120.00071 * 2 1 4 4 H 1.48496 * 109.46971 * 275.39690 * 3 2 1 5 5 H 1.48509 * 109.46930 * 35.39215 * 3 2 1 6 6 H 1.48497 * 109.47275 * 155.38968 * 3 2 1 7 7 C 1.39918 * 120.00496 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99655 * 341.55346 * 7 2 1 9 9 C 1.41089 * 120.00695 * 161.83286 * 7 2 1 10 10 C 1.41205 * 120.04727 * 149.97095 * 9 7 2 11 11 C 1.35779 * 120.43276 * 179.97438 * 10 9 7 12 12 C 1.40460 * 120.21877 * 0.02562 * 11 10 9 13 13 N 1.34800 * 133.23482 * 180.02562 * 12 11 10 14 14 C 1.30346 * 109.89998 * 179.97438 * 13 12 11 15 15 C 1.50702 * 124.93915 * 179.97438 * 14 13 12 16 16 C 1.52995 * 117.50116 * 163.77157 * 15 14 13 17 17 C 1.52995 * 117.49605 * 95.11231 * 15 14 13 18 18 N 1.35920 * 110.12871 * 359.97438 * 14 13 12 19 19 H 0.97001 * 126.45177 * 179.97438 * 18 14 13 20 20 C 1.38316 * 107.09869 * 0.02562 * 18 14 13 21 21 C 1.38014 * 133.94760 * 180.33705 * 20 18 14 22 22 H 0.97007 * 120.00254 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.78465 * 0.02562 * 10 9 7 24 24 H 1.08004 * 119.89571 * 180.02562 * 11 10 9 25 25 H 1.09000 * 115.55071 * 309.44685 * 15 14 13 26 26 H 1.09006 * 117.49708 * 0.02562 * 16 15 14 27 27 H 1.09000 * 117.50328 * 145.02257 * 16 15 14 28 28 H 1.09002 * 117.49634 * 214.98429 * 17 15 14 29 29 H 1.09000 * 117.50514 * 359.97438 * 17 15 14 30 30 H 1.08006 * 120.25599 * 359.91687 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3760 2.1122 -1.3938 5 1 1.5015 2.6172 0.8109 6 1 3.5924 1.4100 0.5830 7 6 2.0082 -1.2117 0.0005 8 1 1.5098 -2.1229 0.2969 9 6 3.3664 -1.2423 -0.3804 10 6 4.2349 -2.2070 0.1753 11 6 5.5432 -2.2440 -0.1860 12 6 6.0457 -1.3206 -1.1176 13 7 7.2663 -1.1208 -1.6534 14 6 7.2262 -0.1202 -2.4878 15 6 8.4033 0.3941 -3.2759 16 6 8.1106 1.3059 -4.4691 17 6 8.5828 -0.1314 -4.7015 18 7 5.9685 0.3920 -2.5439 19 1 5.6743 1.1395 -3.0876 20 6 5.1872 -0.3527 -1.6789 21 6 3.8555 -0.3157 -1.3183 22 1 -0.4851 0.8401 -0.0004 23 1 3.8560 -2.9207 0.8919 24 1 6.1998 -2.9858 0.2442 25 1 9.3044 0.5965 -2.6970 26 1 7.0666 1.5342 -4.6838 27 1 8.8192 2.1081 -4.6754 28 1 9.6020 -0.2744 -5.0606 29 1 7.8499 -0.8494 -5.0694 30 1 3.1950 0.4214 -1.7505 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214886651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:36 Heat of formation + Delta-G solvation = 81.001075 kcal Electronic energy + Delta-G solvation = -14875.478027 eV Core-core repulsion = 12443.471205 eV Total energy + Delta-G solvation = -2432.006822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.09396 -37.33261 -35.99540 -33.40836 -32.14074 -29.57936 -28.72525 -25.37738 -23.23981 -22.48055 -21.25232 -20.56446 -19.66840 -17.54702 -17.06733 -16.06050 -15.50828 -14.99739 -14.28304 -13.98923 -13.64319 -13.10788 -12.69739 -12.61767 -11.93877 -11.63767 -11.62146 -10.95542 -10.89856 -10.60880 -10.54267 -10.38187 -10.18842 -9.97560 -9.61358 -9.22674 -8.88474 -7.38162 -7.12634 -7.05892 -4.52859 2.05861 2.69373 3.02879 3.16654 3.25557 3.45940 3.68682 3.89616 3.93470 4.50030 4.56331 4.81504 4.99028 5.33188 5.35360 5.51322 5.59330 5.76696 5.97436 6.06067 6.14490 6.38417 6.50189 6.62270 6.67988 6.97182 7.15138 7.45311 7.62970 7.71972 7.92309 8.23010 8.25926 8.46965 8.68797 8.90833 9.95098 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.008014 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.409007 B = 3493.123484 C = 4031.059726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.084 3.916 3 Si 0.917 3.083 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.244 1.244 7 C -0.432 4.432 8 H 0.096 0.904 9 C 0.110 3.890 10 C -0.173 4.173 11 C -0.044 4.044 12 C -0.057 4.057 13 N -0.469 5.469 14 C 0.231 3.769 15 C -0.062 4.062 16 C -0.180 4.180 17 C -0.162 4.162 18 N -0.612 5.612 19 H 0.408 0.592 20 C 0.115 3.885 21 C -0.279 4.279 22 H 0.287 0.713 23 H 0.112 0.888 24 H 0.106 0.894 25 H 0.125 0.875 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.902 3.862 -5.802 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.167 1.167 7 C -0.460 4.460 8 H 0.114 0.886 9 C 0.105 3.895 10 C -0.193 4.193 11 C -0.064 4.064 12 C -0.175 4.175 13 N -0.189 5.189 14 C -0.032 4.032 15 C -0.082 4.082 16 C -0.218 4.218 17 C -0.200 4.200 18 N -0.226 5.226 19 H 0.244 0.756 20 C 0.006 3.994 21 C -0.304 4.304 22 H 0.097 0.903 23 H 0.131 0.869 24 H 0.124 0.876 25 H 0.143 0.857 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.343 3.358 -5.494 12.184 hybrid contribution -0.752 1.690 -0.516 1.920 sum 9.591 5.048 -6.010 12.393 Atomic orbital electron populations 1.69708 1.08124 1.30499 1.34106 1.26204 0.94724 1.01902 0.90740 0.86177 0.81317 0.79498 0.78571 1.20128 1.21945 1.16723 1.19479 0.92964 0.96269 1.37314 0.88620 1.17436 0.92890 0.90185 0.88987 1.20808 0.92636 1.02691 1.03172 1.19649 0.95032 0.96335 0.95363 1.18494 0.89251 1.02698 1.07020 1.69593 1.23677 1.15157 1.10448 1.21706 0.84836 0.95598 1.01073 1.20074 0.95686 1.03608 0.88853 1.22995 1.02467 0.94255 1.02034 1.23005 1.02844 0.96499 0.97649 1.42740 1.09031 1.30979 1.39849 0.75563 1.18757 0.93648 0.93693 0.93277 1.19602 0.91413 1.09945 1.09411 0.90268 0.86947 0.87610 0.85674 0.89061 0.87929 0.88048 0.88570 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.78 13.93 55.55 0.77 -20.01 16 2 C 0.08 2.16 5.40 -17.34 -0.09 2.07 16 3 Si 0.92 20.84 24.52 -169.99 -4.17 16.68 16 4 H -0.27 -6.08 6.71 56.52 0.38 -5.70 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.24 -5.81 6.87 56.52 0.39 -5.42 16 7 C -0.43 -11.35 9.54 -37.87 -0.36 -11.71 16 8 H 0.10 2.58 8.06 -52.48 -0.42 2.16 16 9 C 0.11 2.76 5.10 -106.79 -0.54 2.21 16 10 C -0.17 -3.97 9.69 -39.34 -0.38 -4.35 16 11 C -0.04 -0.99 10.02 -39.63 -0.40 -1.39 16 12 C -0.06 -1.35 7.23 -84.67 -0.61 -1.97 16 13 N -0.47 -10.43 11.23 -8.12 -0.09 -10.53 16 14 C 0.23 4.39 7.59 -154.74 -1.18 3.21 16 15 C -0.06 -0.85 6.33 -91.78 -0.58 -1.43 16 16 C -0.18 -1.90 10.11 -26.70 -0.27 -2.17 16 17 C -0.16 -1.84 10.24 -26.70 -0.27 -2.11 16 18 N -0.61 -11.91 6.09 -7.98 -0.05 -11.96 16 19 H 0.41 6.57 8.07 -40.82 -0.33 6.24 16 20 C 0.12 2.70 7.28 -83.96 -0.61 2.08 16 21 C -0.28 -6.88 7.18 -38.76 -0.28 -7.16 16 22 H 0.29 6.73 8.30 -40.82 -0.34 6.40 16 23 H 0.11 2.33 8.06 -52.48 -0.42 1.90 16 24 H 0.11 2.09 8.06 -52.48 -0.42 1.67 16 25 H 0.13 1.56 8.14 -51.93 -0.42 1.13 16 26 H 0.09 0.97 7.26 -51.93 -0.38 0.59 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.10 2.42 4.78 -52.48 -0.25 2.17 16 LS Contribution 257.31 15.07 3.88 3.88 Total: -1.00 -29.42 257.31 -8.32 -37.74 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.09 Total: 6.90 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -5.58 Total: -22.71 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.63 Total: -42.49 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.17 Total: 16.68 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.42 -8.32 -37.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214886651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.744 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds