Wall clock time and date at job start Mon Mar 30 2020 03:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99882 * 2 1 4 4 H 1.09002 * 115.55173 * 4.42156 * 3 2 1 5 5 C 1.52999 * 117.51808 * 218.71902 * 3 2 1 6 6 C 1.53005 * 117.49518 * 150.08944 * 3 2 1 7 7 H 1.09004 * 117.49360 * 215.00320 * 6 3 2 8 8 N 1.46491 * 117.49898 * 0.02562 * 6 3 2 9 9 C 1.34777 * 119.99773 * 205.00232 * 8 6 3 10 10 O 1.21550 * 120.00208 * 359.97438 * 9 8 6 11 11 N 1.34778 * 119.99957 * 179.97438 * 9 8 6 12 12 C 1.34774 * 119.99796 * 179.97438 * 11 9 8 13 13 O 1.21658 * 120.00514 * 0.02562 * 12 11 9 14 14 C 1.46249 * 119.99781 * 179.97438 * 12 11 9 15 15 H 1.08003 * 120.00266 * 359.97438 * 14 12 11 16 16 C 1.40123 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30648 * 120.00019 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00288 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47206 * 90.00050 * 18 16 14 20 20 H 1.48500 * 109.47730 * 210.00496 * 18 16 14 21 21 H 1.48501 * 109.47118 * 330.00376 * 18 16 14 22 22 H 1.08993 * 109.46669 * 299.99621 * 1 2 3 23 23 H 1.09001 * 109.46846 * 59.99564 * 1 2 3 24 24 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 25 25 H 1.09003 * 117.50034 * 0.02562 * 5 3 2 26 26 H 1.08995 * 117.49797 * 145.03057 * 5 3 2 27 27 H 0.97003 * 120.00592 * 24.99690 * 8 6 3 28 28 H 0.97002 * 120.00115 * 0.02562 * 11 9 8 29 29 H 0.96994 * 119.99924 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3058 2.1338 0.0758 5 6 3.2650 1.5207 -0.8487 6 6 3.3723 1.4723 0.6768 7 1 3.5638 2.4104 1.1978 8 7 3.9810 0.2815 1.2746 9 6 4.8691 0.4112 2.2801 10 8 5.1653 1.5163 2.6905 11 7 5.4287 -0.6844 2.8305 12 6 6.3171 -0.5546 3.8355 13 8 6.6137 0.5514 4.2464 14 6 6.9240 -1.7435 4.4332 15 1 6.6598 -2.7256 4.0694 16 6 7.8481 -1.6086 5.4778 17 7 8.1673 -0.4208 5.9183 18 14 8.6226 -3.1271 6.2416 19 1 9.8713 -3.4658 5.5127 20 1 8.9392 -2.8577 7.6672 21 1 7.6731 -4.2654 6.1521 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 3.6471 0.6665 -1.4077 26 1 3.3859 2.4905 -1.3313 27 1 3.7448 -0.6005 0.9469 28 1 5.1926 -1.5663 2.5027 29 1 8.8072 -0.3274 6.6411 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238334109.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:31 Heat of formation + Delta-G solvation = -78.298773 kcal Electronic energy + Delta-G solvation = -15441.049518 eV Core-core repulsion = 12558.992922 eV Total energy + Delta-G solvation = -2882.056596 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.76002 -38.53758 -36.45945 -35.15601 -33.11825 -32.54538 -31.42839 -26.82913 -26.61452 -22.95296 -22.14775 -20.83219 -19.50924 -18.34843 -17.06442 -16.82015 -15.62694 -15.32698 -15.11362 -14.60745 -14.53788 -13.95800 -13.45172 -13.40145 -12.48548 -12.24146 -12.11347 -11.56389 -11.51823 -11.31826 -11.12535 -10.89689 -10.63412 -10.31705 -9.54205 -9.38078 -8.99004 -8.47646 -8.19122 -7.57901 -6.28241 -4.79117 3.10005 3.12793 3.19239 3.23575 3.50265 3.61687 4.03629 4.07649 4.62173 4.80945 4.85390 4.97382 5.14366 5.19041 5.28479 5.45171 5.54390 5.71666 5.76257 6.02429 6.84427 7.09840 7.18284 7.32650 7.60563 8.02290 8.32985 8.84912 8.95905 9.57839 10.46393 10.63415 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.052785 B = 0.005322 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.324759 B = 5259.668387 C = 5590.610105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.001 3.999 4 H 0.114 0.886 5 C -0.205 4.205 6 C 0.114 3.886 7 H 0.142 0.858 8 N -0.719 5.719 9 C 0.691 3.309 10 O -0.548 6.548 11 N -0.696 5.696 12 C 0.539 3.461 13 O -0.516 6.516 14 C -0.538 4.538 15 H 0.074 0.926 16 C 0.084 3.916 17 N -0.759 5.759 18 Si 0.916 3.084 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.263 1.263 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.398 0.602 28 H 0.389 0.611 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.281 -2.092 -11.497 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C -0.059 4.059 4 H 0.132 0.868 5 C -0.244 4.244 6 C 0.005 3.995 7 H 0.159 0.841 8 N -0.375 5.375 9 C 0.392 3.608 10 O -0.421 6.421 11 N -0.360 5.360 12 C 0.344 3.656 13 O -0.391 6.391 14 C -0.574 4.574 15 H 0.092 0.908 16 C -0.137 4.137 17 N -0.388 5.388 18 Si 0.740 3.260 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.188 1.188 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.232 0.768 28 H 0.221 0.779 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.543 -0.436 -10.637 15.703 hybrid contribution -0.189 -1.528 -0.186 1.550 sum -11.732 -1.964 -10.823 16.082 Atomic orbital electron populations 1.22797 0.80549 1.02854 1.00057 1.87787 1.20051 1.25459 1.94222 1.23437 0.90435 0.86658 1.05360 0.86803 1.24035 1.00958 1.03811 0.95608 1.21843 0.94016 0.91659 0.91963 0.84089 1.44589 1.46470 1.08290 1.38128 1.16452 0.79012 0.85892 0.79419 1.90964 1.63535 1.24426 1.63150 1.44850 1.45258 1.07653 1.38285 1.18489 0.77993 0.91349 0.77794 1.90741 1.60607 1.27468 1.60321 1.20847 1.25820 0.91864 1.18896 0.90789 1.25769 0.95368 0.96875 0.95706 1.70004 1.24800 1.23174 1.20792 0.86230 0.79713 0.81571 0.78441 1.19589 1.20313 1.18755 0.93753 0.93982 0.89503 0.87970 0.87579 0.76816 0.77857 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.88 101.05 1.10 1.38 15 2 O -0.36 -4.24 10.39 -35.23 -0.37 -4.60 15 3 C 0.00 0.01 6.44 -26.73 -0.17 -0.16 15 4 H 0.11 1.02 7.93 -51.93 -0.41 0.60 15 5 C -0.20 -2.31 10.41 -26.73 -0.28 -2.58 15 6 C 0.11 1.67 6.43 -67.93 -0.44 1.23 15 7 H 0.14 2.25 7.40 -51.93 -0.38 1.87 15 8 N -0.72 -12.28 5.47 -58.68 -0.32 -12.60 15 9 C 0.69 16.02 8.50 -86.92 -0.74 15.28 15 10 O -0.55 -15.52 14.31 -18.48 -0.26 -15.79 15 11 N -0.70 -16.30 5.24 -17.10 -0.09 -16.39 15 12 C 0.54 15.89 7.68 -13.04 -0.10 15.79 15 13 O -0.52 -17.81 13.41 -18.58 -0.25 -18.06 15 14 C -0.54 -14.98 9.54 -35.66 -0.34 -15.32 15 15 H 0.07 1.82 7.85 -52.48 -0.41 1.41 15 16 C 0.08 2.32 5.50 -17.35 -0.10 2.22 15 17 N -0.76 -22.88 11.83 55.55 0.66 -22.22 15 18 Si 0.92 19.74 29.56 -169.99 -5.02 14.72 15 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 22 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 15 23 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 15 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.11 0.99 8.14 -51.93 -0.42 0.56 15 27 H 0.40 5.77 8.41 -40.82 -0.34 5.43 15 28 H 0.39 7.26 8.69 -40.82 -0.35 6.91 15 29 H 0.27 7.39 8.29 -40.82 -0.34 7.05 15 LS Contribution 266.18 15.07 4.01 4.01 Total: -1.00 -38.47 266.18 -5.86 -44.34 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -3.15 Total: 8.75 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: -1.06 Total: 17.84 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.25 Total: -51.21 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.88 Total: -38.45 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -38.47 -5.86 -44.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238334109.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.962 kcal (2) G-P(sol) polarization free energy of solvation -38.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds