Wall clock time and date at job start Mon Mar 30 2020 03:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99882 * 2 1 4 4 H 1.09002 * 115.55173 * 4.42156 * 3 2 1 5 5 C 1.52999 * 117.51808 * 218.71902 * 3 2 1 6 6 C 1.53005 * 117.49518 * 150.08944 * 3 2 1 7 7 H 1.09004 * 117.49360 * 215.00320 * 6 3 2 8 8 N 1.46491 * 117.49898 * 0.02562 * 6 3 2 9 9 C 1.34777 * 119.99773 * 205.00232 * 8 6 3 10 10 O 1.21550 * 120.00208 * 359.97438 * 9 8 6 11 11 N 1.34778 * 119.99957 * 179.97438 * 9 8 6 12 12 C 1.34774 * 119.99796 * 179.97438 * 11 9 8 13 13 O 1.21658 * 120.00514 * 0.02562 * 12 11 9 14 14 C 1.46249 * 119.99781 * 179.97438 * 12 11 9 15 15 H 1.08003 * 120.00266 * 359.97438 * 14 12 11 16 16 C 1.40123 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30648 * 120.00019 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00288 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47206 * 90.00050 * 18 16 14 20 20 H 1.48500 * 109.47730 * 210.00496 * 18 16 14 21 21 H 1.48501 * 109.47118 * 330.00376 * 18 16 14 22 22 H 1.08993 * 109.46669 * 299.99621 * 1 2 3 23 23 H 1.09001 * 109.46846 * 59.99564 * 1 2 3 24 24 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 25 25 H 1.09003 * 117.50034 * 0.02562 * 5 3 2 26 26 H 1.08995 * 117.49797 * 145.03057 * 5 3 2 27 27 H 0.97003 * 120.00592 * 24.99690 * 8 6 3 28 28 H 0.97002 * 120.00115 * 0.02562 * 11 9 8 29 29 H 0.96994 * 119.99924 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3058 2.1338 0.0758 5 6 3.2650 1.5207 -0.8487 6 6 3.3723 1.4723 0.6768 7 1 3.5638 2.4104 1.1978 8 7 3.9810 0.2815 1.2746 9 6 4.8691 0.4112 2.2801 10 8 5.1653 1.5163 2.6905 11 7 5.4287 -0.6844 2.8305 12 6 6.3171 -0.5546 3.8355 13 8 6.6137 0.5514 4.2464 14 6 6.9240 -1.7435 4.4332 15 1 6.6598 -2.7256 4.0694 16 6 7.8481 -1.6086 5.4778 17 7 8.1673 -0.4208 5.9183 18 14 8.6226 -3.1271 6.2416 19 1 9.8713 -3.4658 5.5127 20 1 8.9392 -2.8577 7.6672 21 1 7.6731 -4.2654 6.1521 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 3.6471 0.6665 -1.4077 26 1 3.3859 2.4905 -1.3313 27 1 3.7448 -0.6005 0.9469 28 1 5.1926 -1.5663 2.5027 29 1 8.8072 -0.3274 6.6411 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238334109.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:31 Heat of formation + Delta-G solvation = -109.986332 kcal Electronic energy + Delta-G solvation = -15442.423594 eV Core-core repulsion = 12558.992922 eV Total energy + Delta-G solvation = -2883.430672 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.53353 -39.72461 -38.32507 -36.43296 -35.13656 -34.65137 -33.02380 -28.78222 -27.49721 -24.65772 -23.06094 -22.24346 -21.40228 -20.25641 -18.70755 -18.07234 -17.53140 -16.59343 -16.47790 -16.18393 -15.86942 -15.63961 -14.93170 -14.54504 -14.43169 -14.14949 -13.26300 -13.14324 -12.79216 -12.76853 -12.51293 -12.28468 -12.12081 -12.01153 -11.56153 -11.01125 -10.57944 -10.33831 -9.85317 -9.56252 -8.37632 -7.01005 1.40727 1.41663 1.60240 1.74058 1.79252 2.27155 2.53587 2.63927 2.95970 3.43508 3.58708 3.82222 3.97390 4.18404 4.46969 4.60251 4.62466 4.84176 4.89783 4.93492 5.24539 5.39550 5.53797 5.74460 5.94330 6.23684 6.49577 6.74800 7.12079 7.73994 8.32079 8.56085 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.052785 B = 0.005322 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.324759 B = 5259.668387 C = 5590.610105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.379 6.379 3 C 0.027 3.973 4 H 0.143 0.857 5 C -0.181 4.181 6 C 0.061 3.939 7 H 0.119 0.881 8 N -0.693 5.693 9 C 0.688 3.312 10 O -0.606 6.606 11 N -0.686 5.686 12 C 0.522 3.478 13 O -0.581 6.581 14 C -0.556 4.556 15 H 0.107 0.893 16 C 0.022 3.978 17 N -0.817 5.817 18 Si 1.012 2.988 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.241 1.241 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.130 0.870 27 H 0.413 0.587 28 H 0.413 0.587 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.412 -4.398 -12.792 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.297 6.297 3 C -0.032 4.032 4 H 0.160 0.840 5 C -0.220 4.220 6 C -0.046 4.046 7 H 0.137 0.863 8 N -0.349 5.349 9 C 0.389 3.611 10 O -0.483 6.483 11 N -0.352 5.352 12 C 0.328 3.672 13 O -0.462 6.462 14 C -0.591 4.591 15 H 0.125 0.875 16 C -0.194 4.194 17 N -0.447 5.447 18 Si 0.830 3.170 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.164 1.164 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.148 0.852 27 H 0.250 0.750 28 H 0.249 0.751 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.768 -2.805 -12.037 17.770 hybrid contribution 0.042 -0.794 0.119 0.804 sum -12.726 -3.600 -11.918 17.803 Atomic orbital electron populations 1.23027 0.78615 1.04122 1.01144 1.87758 1.22175 1.25653 1.94113 1.23504 0.89830 0.87570 1.02329 0.83962 1.24087 1.00057 1.05234 0.92601 1.22109 0.98129 0.89963 0.94424 0.86335 1.44250 1.44454 1.10115 1.36094 1.16596 0.79546 0.84778 0.80220 1.90921 1.65668 1.26491 1.65256 1.44312 1.44383 1.09117 1.37338 1.19048 0.78499 0.91151 0.78508 1.90694 1.63095 1.29652 1.62752 1.21470 1.25871 0.92617 1.19186 0.87527 1.27221 0.95398 1.01000 0.95776 1.70199 1.25834 1.26896 1.21739 0.84805 0.78882 0.76282 0.77007 1.18385 1.19962 1.16394 0.93483 0.92042 0.88297 0.87678 0.85152 0.75036 0.75120 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.88 113.37 1.23 1.60 15 2 O -0.38 -7.94 10.39 -148.98 -1.55 -9.49 15 3 C 0.03 0.55 6.44 30.60 0.20 0.75 15 4 H 0.14 2.06 7.93 -2.39 -0.02 2.04 15 5 C -0.18 -3.64 10.41 30.60 0.32 -3.32 15 6 C 0.06 1.76 6.43 45.00 0.29 2.05 15 7 H 0.12 3.96 7.40 -2.38 -0.02 3.95 15 8 N -0.69 -23.61 5.47 -457.85 -2.50 -26.11 15 9 C 0.69 32.87 8.50 179.05 1.52 34.39 15 10 O -0.61 -36.25 14.31 18.89 0.27 -35.98 15 11 N -0.69 -32.73 5.24 -444.51 -2.33 -35.06 15 12 C 0.52 31.69 7.68 86.32 0.66 32.36 15 13 O -0.58 -42.22 13.41 18.55 0.25 -41.97 15 14 C -0.56 -30.96 9.54 24.81 0.24 -30.72 15 15 H 0.11 5.03 7.85 -2.91 -0.02 5.01 15 16 C 0.02 1.21 5.50 85.33 0.47 1.68 15 17 N -0.82 -50.71 11.83 21.85 0.26 -50.45 15 18 Si 1.01 39.71 29.56 68.60 2.03 41.74 15 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 21 H -0.24 -8.53 7.11 99.48 0.71 -7.82 15 22 H 0.05 0.62 8.14 -2.39 -0.02 0.60 15 23 H 0.06 0.62 8.14 -2.39 -0.02 0.60 15 24 H 0.10 1.11 8.14 -2.39 -0.02 1.09 15 25 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.13 2.02 8.14 -2.39 -0.02 2.00 15 27 H 0.41 11.48 8.41 -92.71 -0.78 10.70 15 28 H 0.41 15.16 8.69 -92.71 -0.81 14.36 15 29 H 0.28 15.58 8.29 -92.71 -0.77 14.81 15 Total: -1.00 -88.87 266.18 0.97 -87.90 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.39 Total: 30.63 kcal Atomic # 6 Polarization: 33.86 SS G_CDS: 4.93 Total: 38.79 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -4.57 Total: -111.62 kcal Atomic # 8 Polarization: -86.41 SS G_CDS: -1.03 Total: -87.44 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -88.87 0.97 -87.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238334109.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.085 kcal (2) G-P(sol) polarization free energy of solvation -88.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds