Wall clock time and date at job start Mon Mar 30 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41000 * 120.86041 * 2 1 4 4 C 1.41021 * 120.70392 * 0.02562 * 3 2 1 5 5 H 1.08003 * 119.99720 * 312.69168 * 4 3 2 6 6 C 1.39943 * 119.99880 * 132.69446 * 4 3 2 7 7 N 1.30873 * 119.99752 * 161.87173 * 6 4 3 8 8 Si 1.86801 * 120.00068 * 341.87247 * 6 4 3 9 9 H 1.48497 * 109.47247 * 95.54695 * 8 6 4 10 10 H 1.48506 * 109.46743 * 215.54375 * 8 6 4 11 11 H 1.48499 * 109.46944 * 335.54290 * 8 6 4 12 12 C 1.41706 * 118.59092 * 179.97438 * 3 2 1 13 13 N 1.38093 * 119.90883 * 179.97438 * 12 3 2 14 14 N 1.32269 * 120.18960 * 0.02562 * 12 3 2 15 15 C 1.31967 * 121.86610 * 359.95897 * 14 12 3 16 16 C 1.38020 * 120.86214 * 179.97438 * 2 1 3 17 17 C 1.50694 * 120.18174 * 359.74105 * 16 2 1 18 18 F 1.39899 * 109.47578 * 300.00256 * 17 16 2 19 19 F 1.39905 * 109.47028 * 60.00523 * 17 16 2 20 20 H 1.08999 * 109.46857 * 270.02411 * 1 2 3 21 21 H 1.08996 * 109.46961 * 30.02169 * 1 2 3 22 22 H 1.08994 * 109.47029 * 150.02386 * 1 2 3 23 23 H 0.97004 * 119.99586 * 179.97438 * 7 6 4 24 24 H 0.97000 * 119.99773 * 351.56429 * 13 12 3 25 25 H 0.96998 * 119.99752 * 171.55513 * 13 12 3 26 26 H 1.08005 * 119.27984 * 180.02562 * 15 14 12 27 27 H 1.09004 * 109.47134 * 179.97438 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2302 1.2104 0.0000 4 6 1.5587 2.4504 0.0005 5 1 0.7437 2.6234 -0.6866 6 6 1.9486 3.4568 0.8914 7 7 1.5932 4.6974 0.6733 8 14 2.9762 3.0295 2.3917 9 1 4.4127 3.2500 2.0869 10 1 2.5733 3.8940 3.5300 11 1 2.7592 1.6051 2.7508 12 6 3.6462 1.1543 0.0006 13 7 4.3816 2.3231 0.0000 14 7 4.2655 -0.0145 0.0006 15 6 3.6014 -1.1549 0.0008 16 6 2.2150 -1.1848 0.0005 17 6 1.4854 -2.5033 0.0070 18 9 0.6870 -2.5890 1.1526 19 9 0.6783 -2.5953 -1.1320 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5134 23 1 1.8631 5.3949 1.2911 24 1 3.9366 3.1760 -0.1239 25 1 5.3431 2.2911 0.1238 26 1 4.1497 -2.0854 0.0012 27 1 2.2087 -3.3188 0.0060 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238444510.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:23 Heat of formation + Delta-G solvation = -74.166993 kcal Electronic energy + Delta-G solvation = -16060.507251 eV Core-core repulsion = 13067.542307 eV Total energy + Delta-G solvation = -2992.964944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.46323 -46.40887 -39.15635 -34.67116 -33.76754 -32.04022 -29.95814 -27.72268 -25.03710 -24.59374 -21.06677 -20.36889 -18.00242 -17.29219 -16.65086 -16.25087 -15.90673 -15.55728 -14.87286 -13.97435 -13.64852 -13.23196 -12.99986 -12.83198 -12.80381 -12.40241 -12.07413 -11.72213 -11.51770 -11.33899 -11.16933 -11.04013 -10.24261 -10.01294 -9.55322 -9.10842 -8.51251 -8.17636 -7.00262 -6.77299 -4.45575 2.19515 2.41929 3.11313 3.15892 3.27314 3.95499 4.32791 4.41659 4.62153 4.86794 5.07215 5.27127 5.62222 5.67925 5.91233 6.17699 6.45466 6.51504 6.57144 6.93199 6.97560 7.14397 7.39265 7.57327 8.13695 8.31221 8.38130 8.57293 8.73839 9.29751 10.14943 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.010924 C = 0.009776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.946757 B = 2562.516455 C = 2863.380165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.069 4.069 3 C -0.001 4.001 4 C -0.466 4.466 5 H 0.094 0.906 6 C 0.078 3.922 7 N -0.823 5.823 8 Si 0.903 3.097 9 H -0.259 1.259 10 H -0.293 1.293 11 H -0.260 1.260 12 C 0.343 3.657 13 N -0.849 5.849 14 N -0.540 5.540 15 C 0.076 3.924 16 C -0.251 4.251 17 C 0.325 3.675 18 F -0.208 7.208 19 F -0.207 7.207 20 H 0.060 0.940 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.282 0.718 24 H 0.412 0.588 25 H 0.389 0.611 26 H 0.134 0.866 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 -7.339 0.470 7.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.077 4.077 3 C -0.009 4.009 4 C -0.498 4.498 5 H 0.112 0.888 6 C -0.137 4.137 7 N -0.450 5.450 8 Si 0.729 3.271 9 H -0.184 1.184 10 H -0.221 1.221 11 H -0.184 1.184 12 C 0.104 3.896 13 N -0.398 5.398 14 N -0.258 5.258 15 C -0.079 4.079 16 C -0.257 4.257 17 C 0.271 3.729 18 F -0.189 7.189 19 F -0.189 7.189 20 H 0.079 0.921 21 H 0.089 0.911 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.247 0.753 25 H 0.216 0.784 26 H 0.152 0.848 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.823 -7.122 0.507 7.678 hybrid contribution -0.365 0.273 0.733 0.864 sum 2.458 -6.849 1.240 7.382 Atomic orbital electron populations 1.20617 0.91574 1.01985 1.01502 1.19951 0.95559 0.91116 1.01109 1.17947 0.89860 0.94271 0.98775 1.18855 1.17763 0.94020 1.19159 0.88827 1.25928 0.95118 0.93869 0.98775 1.69727 1.39553 1.00520 1.35201 0.86556 0.80482 0.80034 0.80040 1.18409 1.22051 1.18434 1.18810 0.89156 0.85834 0.95794 1.42277 1.09316 1.06219 1.82015 1.66781 1.40552 0.97383 1.21093 1.21385 0.89251 0.94622 1.02676 1.20554 0.95602 0.93612 1.15907 1.20135 0.84209 0.97809 0.70755 1.92960 1.76972 1.97469 1.51504 1.92923 1.76505 1.97295 1.52131 0.92128 0.91136 0.92601 0.90798 0.75298 0.78359 0.84848 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 8.71 36.01 0.31 -1.78 15 2 C -0.07 -1.59 5.93 -103.66 -0.61 -2.21 15 3 C 0.00 -0.02 4.58 -106.47 -0.49 -0.50 15 4 C -0.47 -12.01 8.15 -37.89 -0.31 -12.32 15 5 H 0.09 2.57 7.27 -52.48 -0.38 2.19 15 6 C 0.08 1.96 4.09 -17.32 -0.07 1.89 15 7 N -0.82 -21.02 13.93 55.55 0.77 -20.25 15 8 Si 0.90 20.51 24.49 -169.99 -4.16 16.34 15 9 H -0.26 -5.45 6.31 56.52 0.36 -5.10 15 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.26 -6.43 7.11 56.52 0.40 -6.03 15 12 C 0.34 8.02 6.33 -155.02 -0.98 7.04 15 13 N -0.85 -17.79 6.12 31.45 0.19 -17.60 15 14 N -0.54 -12.05 10.37 -11.87 -0.12 -12.17 15 15 C 0.08 1.53 10.81 -17.33 -0.19 1.34 15 16 C -0.25 -5.13 5.38 -104.54 -0.56 -5.69 15 17 C 0.33 5.48 4.96 36.00 0.18 5.66 15 18 F -0.21 -3.74 16.54 2.25 0.04 -3.70 15 19 F -0.21 -3.66 15.42 2.25 0.03 -3.62 15 20 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 21 H 0.07 1.49 6.75 -51.93 -0.35 1.14 15 22 H 0.06 1.08 5.67 -51.93 -0.29 0.78 15 23 H 0.28 6.61 8.30 -40.82 -0.34 6.27 15 24 H 0.41 8.84 5.82 -40.82 -0.24 8.60 15 25 H 0.39 7.11 8.95 -40.82 -0.37 6.75 15 26 H 0.13 2.13 7.93 -52.48 -0.42 1.71 15 27 H 0.11 1.33 7.87 -51.93 -0.41 0.92 15 LS Contribution 233.06 15.07 3.51 3.51 Total: -1.00 -27.68 233.06 -4.51 -32.20 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -2.06 Total: 11.86 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.72 Total: -6.56 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.84 Total: -50.02 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 0.07 Total: -7.32 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.16 Total: 16.34 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -27.68 -4.51 -32.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238444510.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.970 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds