Wall clock time and date at job start Mon Mar 30 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41000 * 120.86041 * 2 1 4 4 C 1.41021 * 120.70392 * 0.02562 * 3 2 1 5 5 H 1.08003 * 119.99720 * 312.69168 * 4 3 2 6 6 C 1.39943 * 119.99880 * 132.69446 * 4 3 2 7 7 N 1.30873 * 119.99752 * 161.87173 * 6 4 3 8 8 Si 1.86801 * 120.00068 * 341.87247 * 6 4 3 9 9 H 1.48497 * 109.47247 * 95.54695 * 8 6 4 10 10 H 1.48506 * 109.46743 * 215.54375 * 8 6 4 11 11 H 1.48499 * 109.46944 * 335.54290 * 8 6 4 12 12 C 1.41706 * 118.59092 * 179.97438 * 3 2 1 13 13 N 1.38093 * 119.90883 * 179.97438 * 12 3 2 14 14 N 1.32269 * 120.18960 * 0.02562 * 12 3 2 15 15 C 1.31967 * 121.86610 * 359.95897 * 14 12 3 16 16 C 1.38020 * 120.86214 * 179.97438 * 2 1 3 17 17 C 1.50694 * 120.18174 * 359.74105 * 16 2 1 18 18 F 1.39899 * 109.47578 * 300.00256 * 17 16 2 19 19 F 1.39905 * 109.47028 * 60.00523 * 17 16 2 20 20 H 1.08999 * 109.46857 * 270.02411 * 1 2 3 21 21 H 1.08996 * 109.46961 * 30.02169 * 1 2 3 22 22 H 1.08994 * 109.47029 * 150.02386 * 1 2 3 23 23 H 0.97004 * 119.99586 * 179.97438 * 7 6 4 24 24 H 0.97000 * 119.99773 * 351.56429 * 13 12 3 25 25 H 0.96998 * 119.99752 * 171.55513 * 13 12 3 26 26 H 1.08005 * 119.27984 * 180.02562 * 15 14 12 27 27 H 1.09004 * 109.47134 * 179.97438 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2302 1.2104 0.0000 4 6 1.5587 2.4504 0.0005 5 1 0.7437 2.6234 -0.6866 6 6 1.9486 3.4568 0.8914 7 7 1.5932 4.6974 0.6733 8 14 2.9762 3.0295 2.3917 9 1 4.4127 3.2500 2.0869 10 1 2.5733 3.8940 3.5300 11 1 2.7592 1.6051 2.7508 12 6 3.6462 1.1543 0.0006 13 7 4.3816 2.3231 0.0000 14 7 4.2655 -0.0145 0.0006 15 6 3.6014 -1.1549 0.0008 16 6 2.2150 -1.1848 0.0005 17 6 1.4854 -2.5033 0.0070 18 9 0.6870 -2.5890 1.1526 19 9 0.6783 -2.5953 -1.1320 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5134 23 1 1.8631 5.3949 1.2911 24 1 3.9366 3.1760 -0.1239 25 1 5.3431 2.2911 0.1238 26 1 4.1497 -2.0854 0.0012 27 1 2.2087 -3.3188 0.0060 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238444510.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:23 Heat of formation + Delta-G solvation = -92.679282 kcal Electronic energy + Delta-G solvation = -16061.310005 eV Core-core repulsion = 13067.542307 eV Total energy + Delta-G solvation = -2993.767698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.80892 -47.76179 -40.87589 -36.39130 -35.53639 -33.83194 -31.59795 -29.45117 -26.83397 -26.08281 -22.76848 -22.05472 -19.80619 -18.79955 -18.00109 -17.80242 -17.52967 -17.21410 -16.63244 -15.66742 -15.23686 -14.90348 -14.65924 -14.49128 -14.17298 -13.98528 -13.76779 -13.34854 -13.19817 -12.98214 -12.92093 -12.79104 -12.10828 -11.62890 -11.27540 -10.87731 -10.24344 -9.94519 -8.81499 -8.55846 -6.37687 0.51099 0.65298 1.29444 1.34975 1.41968 2.11018 2.60617 2.89449 3.11214 3.28488 3.53691 3.92648 4.06342 4.24201 4.32184 4.48903 4.76565 4.83755 4.85978 5.19366 5.31216 5.39828 5.63748 5.87796 6.23222 6.43761 6.69168 6.80884 6.89701 7.58266 8.33351 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.010924 C = 0.009776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.946757 B = 2562.516455 C = 2863.380165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.080 4.080 3 C -0.037 4.037 4 C -0.486 4.486 5 H 0.058 0.942 6 C 0.055 3.945 7 N -0.861 5.861 8 Si 0.949 3.051 9 H -0.233 1.233 10 H -0.290 1.290 11 H -0.288 1.288 12 C 0.336 3.664 13 N -0.843 5.843 14 N -0.551 5.551 15 C 0.096 3.904 16 C -0.266 4.266 17 C 0.327 3.673 18 F -0.215 7.215 19 F -0.213 7.213 20 H 0.061 0.939 21 H 0.055 0.945 22 H 0.071 0.929 23 H 0.288 0.712 24 H 0.410 0.590 25 H 0.402 0.598 26 H 0.187 0.813 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -9.713 0.892 10.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.045 4.045 4 C -0.520 4.520 5 H 0.076 0.924 6 C -0.157 4.157 7 N -0.490 5.490 8 Si 0.775 3.225 9 H -0.156 1.156 10 H -0.218 1.218 11 H -0.214 1.214 12 C 0.098 3.902 13 N -0.392 5.392 14 N -0.269 5.269 15 C -0.060 4.060 16 C -0.272 4.272 17 C 0.273 3.727 18 F -0.197 7.197 19 F -0.194 7.194 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.244 0.756 25 H 0.232 0.768 26 H 0.203 0.797 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.417 -9.471 0.920 10.491 hybrid contribution -0.842 0.791 0.532 1.272 sum 3.575 -8.680 1.452 9.499 Atomic orbital electron populations 1.20580 0.90973 1.02028 1.01552 1.20401 0.96528 0.91990 0.99844 1.18074 0.90857 0.94374 1.01202 1.18690 1.17845 0.95605 1.19820 0.92410 1.26315 0.95892 0.93563 0.99911 1.69752 1.41619 1.01194 1.36453 0.85869 0.81051 0.77784 0.77842 1.15632 1.21760 1.21356 1.18954 0.88925 0.86869 0.95461 1.42252 1.09964 1.05600 1.81402 1.66953 1.40697 0.97583 1.21711 1.22330 0.89580 0.95730 0.98410 1.20990 0.96307 0.94638 1.15246 1.20506 0.84628 0.97444 0.70136 1.92950 1.77329 1.97403 1.51994 1.92914 1.76818 1.97211 1.52497 0.92006 0.92576 0.90988 0.90151 0.75640 0.76810 0.79670 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.96 8.71 71.24 0.62 -3.34 15 2 C -0.08 -3.58 5.93 -19.24 -0.11 -3.70 15 3 C -0.04 -1.85 4.58 -21.06 -0.10 -1.94 15 4 C -0.49 -26.04 8.15 23.37 0.19 -25.85 15 5 H 0.06 3.40 7.27 -2.91 -0.02 3.38 15 6 C 0.05 2.80 4.09 85.25 0.35 3.15 15 7 N -0.86 -45.31 13.93 21.83 0.30 -45.00 15 8 Si 0.95 42.32 24.49 68.60 1.68 44.00 15 9 H -0.23 -9.23 6.31 99.48 0.63 -8.60 15 10 H -0.29 -12.65 7.11 99.48 0.71 -11.94 15 11 H -0.29 -14.07 7.11 99.48 0.71 -13.36 15 12 C 0.34 15.31 6.33 134.05 0.85 16.15 15 13 N -0.84 -34.37 6.12 -54.41 -0.33 -34.71 15 14 N -0.55 -22.91 10.37 -191.45 -1.99 -24.90 15 15 C 0.10 3.42 10.81 84.78 0.92 4.34 15 16 C -0.27 -10.02 5.38 -19.81 -0.11 -10.13 15 17 C 0.33 9.59 4.96 71.23 0.35 9.95 15 18 F -0.22 -7.03 16.54 44.97 0.74 -6.29 15 19 F -0.21 -6.80 15.42 44.97 0.69 -6.11 15 20 H 0.06 2.53 8.14 -2.39 -0.02 2.51 15 21 H 0.06 2.47 6.75 -2.39 -0.02 2.45 15 22 H 0.07 2.71 5.67 -2.39 -0.01 2.70 15 23 H 0.29 13.82 8.30 -92.71 -0.77 13.05 15 24 H 0.41 17.48 5.82 -92.71 -0.54 16.94 15 25 H 0.40 13.92 8.95 -92.71 -0.83 13.09 15 26 H 0.19 4.63 7.93 -2.91 -0.02 4.60 15 27 H 0.16 3.01 7.87 -2.39 -0.02 3.00 15 Total: -1.00 -60.42 233.06 3.86 -56.57 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.21 Total: 27.81 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 2.96 Total: -11.38 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -2.01 Total: -104.61 kcal Atomic # 9 Polarization: -13.84 SS G_CDS: 1.44 Total: -12.40 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.68 Total: 44.00 kcal Total: -60.42 3.86 -56.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238444510.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.111 kcal (2) G-P(sol) polarization free energy of solvation -60.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds