Wall clock time and date at job start Mon Mar 30 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36772 * 120.67165 * 2 1 4 4 C 1.40815 * 119.22799 * 180.23997 * 3 2 1 5 5 C 1.41062 * 119.72493 * 179.71825 * 4 3 2 6 6 H 1.08002 * 119.99889 * 6.98325 * 5 4 3 7 7 C 1.39979 * 120.00227 * 186.98020 * 5 4 3 8 8 N 1.30793 * 120.00182 * 6.94144 * 7 5 4 9 9 Si 1.86807 * 119.99857 * 187.21846 * 7 5 4 10 10 H 1.48495 * 109.47016 * 264.74247 * 9 7 5 11 11 H 1.48499 * 109.47186 * 24.74075 * 9 7 5 12 12 H 1.48498 * 109.46899 * 144.74071 * 9 7 5 13 13 N 1.33753 * 120.55429 * 359.44858 * 4 3 2 14 14 C 1.31262 * 121.45695 * 0.27177 * 13 4 3 15 15 C 1.50701 * 119.63582 * 179.97438 * 14 13 4 16 16 F 1.39909 * 109.46694 * 120.00187 * 15 14 13 17 17 F 1.39898 * 109.47463 * 239.99774 * 15 14 13 18 18 C 1.39816 * 120.67570 * 179.68956 * 2 1 3 19 19 N 1.38842 * 120.31427 * 0.04924 * 18 2 1 20 20 H 1.09000 * 109.47182 * 270.30389 * 1 2 3 21 21 H 1.09001 * 109.47207 * 30.30789 * 1 2 3 22 22 H 1.09004 * 109.46662 * 150.31109 * 1 2 3 23 23 H 1.07999 * 120.38907 * 359.97438 * 3 2 1 24 24 H 0.97001 * 119.99965 * 180.27481 * 8 7 5 25 25 H 1.09000 * 109.47204 * 0.02562 * 15 14 13 26 26 H 0.97001 * 120.00817 * 179.97438 * 19 18 2 27 27 H 0.97000 * 119.99685 * 359.96578 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1764 0.0000 4 6 3.6124 1.1409 -0.0051 5 6 4.3425 2.3479 -0.0112 6 1 3.8280 3.2908 0.1018 7 6 5.7337 2.3237 -0.1637 8 7 6.3423 1.1984 -0.4358 9 14 6.7220 3.8971 0.0293 10 1 6.9471 4.5071 -1.3057 11 1 5.9738 4.8494 0.8887 12 1 8.0306 3.5856 0.6583 13 7 4.2631 -0.0276 0.0011 14 6 3.6182 -1.1708 0.0068 15 6 4.3928 -2.4635 0.0132 16 9 4.0668 -3.1968 1.1592 17 9 4.0668 -3.2082 -1.1253 18 6 2.2203 -1.2025 0.0065 19 7 1.5470 -2.4167 0.0121 20 1 -0.3633 0.0055 1.0276 21 1 -0.3634 0.8872 -0.5186 22 1 -0.3633 -0.8928 -0.5090 23 1 1.6821 2.1215 -0.0004 24 1 7.3068 1.1809 -0.5375 25 1 5.4611 -2.2469 0.0125 26 1 2.0463 -3.2483 0.0162 27 1 0.5771 -2.4334 0.0119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238470812.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:28 Heat of formation + Delta-G solvation = -95.954457 kcal Electronic energy + Delta-G solvation = -15812.042343 eV Core-core repulsion = 12818.132623 eV Total energy + Delta-G solvation = -2993.909720 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.98385 -47.92248 -40.50712 -36.44837 -34.66479 -34.01954 -31.05667 -28.18877 -27.96490 -26.12357 -22.57051 -22.26975 -19.53138 -18.34556 -18.18122 -17.84561 -17.42914 -17.06119 -16.53104 -15.44757 -15.06862 -14.94844 -14.68108 -14.34728 -13.88726 -13.74948 -13.49079 -13.47065 -12.97022 -12.85963 -12.50954 -12.50186 -12.03918 -11.82802 -11.60552 -10.83447 -9.93778 -9.66445 -8.54617 -8.28283 -6.18592 0.69685 1.09866 1.44992 1.54317 1.59163 2.29281 2.74461 2.82001 3.32126 3.36348 3.73777 3.84047 4.29988 4.30855 4.47743 4.63934 4.84546 4.86861 5.08974 5.14457 5.36058 5.43756 5.68375 5.98309 6.27306 6.70720 6.85544 7.03808 7.19385 8.06369 8.55598 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.010026 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.774259 B = 2792.041039 C = 3581.946216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.106 4.106 3 C -0.219 4.219 4 C 0.196 3.804 5 C -0.480 4.480 6 H 0.088 0.912 7 C 0.028 3.972 8 N -0.776 5.776 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.257 1.257 12 H -0.272 1.272 13 N -0.466 5.466 14 C -0.026 4.026 15 C 0.335 3.665 16 F -0.203 7.203 17 F -0.204 7.204 18 C 0.076 3.924 19 N -0.869 5.869 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.120 0.880 24 H 0.276 0.724 25 H 0.125 0.875 26 H 0.390 0.610 27 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 -3.372 0.669 6.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.242 4.242 4 C 0.066 3.934 5 C -0.513 4.513 6 H 0.106 0.894 7 C -0.191 4.191 8 N -0.401 5.401 9 Si 0.804 3.196 10 H -0.190 1.190 11 H -0.181 1.181 12 H -0.197 1.197 13 N -0.180 5.180 14 C -0.172 4.172 15 C 0.280 3.720 16 F -0.185 7.185 17 F -0.185 7.185 18 C -0.030 4.030 19 N -0.415 5.415 20 H 0.093 0.907 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.138 0.862 24 H 0.087 0.913 25 H 0.142 0.858 26 H 0.219 0.781 27 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.253 -3.462 0.622 5.519 hybrid contribution -0.433 0.136 0.002 0.454 sum -4.686 -3.326 0.624 5.780 Atomic orbital electron populations 1.20551 0.88704 1.03007 1.02541 1.19565 0.97286 0.90938 1.03922 1.21622 0.94609 0.97692 1.10265 1.18745 0.89836 0.91393 0.93379 1.19666 0.92845 0.92738 1.46090 0.89431 1.26800 0.99129 1.00608 0.92569 1.70137 1.10340 1.28492 1.31109 0.85196 0.77455 0.77746 0.79248 1.19006 1.18089 1.19726 1.68072 1.37882 0.96415 1.15638 1.21351 0.90090 0.95101 1.10653 1.19943 1.00083 0.81626 0.70331 1.92927 1.94819 1.79288 1.51445 1.92923 1.94806 1.78704 1.52082 1.18121 0.91086 0.87900 1.05942 1.41790 1.08577 1.03597 1.87555 0.90674 0.90858 0.90866 0.86154 0.91336 0.85807 0.78123 0.76959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.69 9.62 71.24 0.69 -2.00 15 2 C -0.11 -4.42 5.89 -19.83 -0.12 -4.53 15 3 C -0.22 -10.35 9.45 22.56 0.21 -10.14 15 4 C 0.20 10.77 6.52 40.17 0.26 11.04 15 5 C -0.48 -26.02 9.11 23.39 0.21 -25.80 15 6 H 0.09 4.42 7.86 -2.91 -0.02 4.40 15 7 C 0.03 1.46 5.47 85.27 0.47 1.92 15 8 N -0.78 -42.10 11.55 21.83 0.25 -41.85 15 9 Si 0.98 38.70 29.57 68.60 2.03 40.73 15 10 H -0.27 -10.05 7.11 99.48 0.71 -9.34 15 11 H -0.26 -9.77 7.11 99.48 0.71 -9.07 15 12 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 13 N -0.47 -25.82 7.84 -176.56 -1.38 -27.21 15 14 C -0.03 -1.28 6.31 43.03 0.27 -1.01 15 15 C 0.33 13.90 5.03 71.24 0.36 14.26 15 16 F -0.20 -7.89 16.26 44.97 0.73 -7.16 15 17 F -0.20 -8.01 16.26 44.97 0.73 -7.28 15 18 C 0.08 3.27 6.67 38.80 0.26 3.53 15 19 N -0.87 -29.42 8.72 -50.76 -0.44 -29.86 15 20 H 0.07 1.98 8.14 -2.39 -0.02 1.97 15 21 H 0.07 1.98 8.10 -2.39 -0.02 1.96 15 22 H 0.07 1.84 6.65 -2.39 -0.02 1.82 15 23 H 0.12 5.16 8.06 -2.91 -0.02 5.14 15 24 H 0.28 13.60 8.30 -92.71 -0.77 12.84 15 25 H 0.12 5.11 8.11 -2.39 -0.02 5.09 15 26 H 0.39 12.88 6.25 -92.71 -0.58 12.30 15 27 H 0.40 10.93 6.93 -92.71 -0.64 10.29 15 Total: -1.00 -62.21 243.98 4.54 -57.67 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.01 Total: 27.69 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 2.61 Total: -12.73 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -1.57 Total: -98.92 kcal Atomic # 9 Polarization: -15.90 SS G_CDS: 1.46 Total: -14.44 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -62.21 4.54 -57.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470812.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.282 kcal (2) G-P(sol) polarization free energy of solvation -62.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds