Wall clock time and date at job start Mon Mar 30 2020 03:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39707 * 120.25002 * 2 1 4 4 N 1.38371 * 119.43245 * 359.97438 * 3 2 1 5 5 N 1.32745 * 121.13716 * 179.71911 * 3 2 1 6 6 C 1.31481 * 121.73146 * 0.25961 * 5 3 2 7 7 C 1.40753 * 120.37214 * 359.97438 * 6 5 3 8 8 C 1.41200 * 120.57281 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99471 * 151.55018 * 8 7 6 10 10 C 1.39866 * 120.00290 * 331.54500 * 8 7 6 11 11 N 1.30899 * 119.99754 * 348.55365 * 10 8 7 12 12 Si 1.86797 * 120.00079 * 168.54636 * 10 8 7 13 13 H 1.48500 * 109.46915 * 60.00276 * 12 10 8 14 14 H 1.48505 * 109.46955 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47203 * 300.00554 * 12 10 8 16 16 C 1.36559 * 120.25635 * 180.23380 * 2 1 3 17 17 C 1.50704 * 120.79809 * 0.02562 * 16 2 1 18 18 F 1.39897 * 109.47146 * 291.23989 * 17 16 2 19 19 F 1.39904 * 109.46575 * 51.23841 * 17 16 2 20 20 H 1.08996 * 109.47243 * 90.00745 * 1 2 3 21 21 H 1.09008 * 109.47034 * 209.99716 * 1 2 3 22 22 H 1.08992 * 109.47406 * 330.00055 * 1 2 3 23 23 H 0.96998 * 120.00049 * 179.72811 * 4 3 2 24 24 H 0.96999 * 120.00050 * 359.45152 * 4 3 2 25 25 H 1.08003 * 119.81796 * 180.02562 * 6 5 3 26 26 H 0.97000 * 120.00013 * 179.97438 * 11 10 8 27 27 H 1.08998 * 109.47355 * 171.23535 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2108 1.2068 0.0000 4 7 1.5123 2.4013 -0.0005 5 7 3.5381 1.2274 0.0056 6 6 4.2468 0.1200 0.0062 7 6 3.6076 -1.1340 0.0015 8 6 4.3646 -2.3260 0.0028 9 1 3.9580 -3.2234 0.4452 10 6 5.6409 -2.3446 -0.5690 11 7 6.0460 -1.3358 -1.2983 12 14 6.7673 -3.8087 -0.2919 13 1 6.1205 -5.0374 -0.8183 14 1 8.0539 -3.5842 -0.9989 15 1 7.0232 -3.9682 1.1622 16 6 2.1951 -1.1796 -0.0048 17 6 1.4657 -2.4983 -0.0108 18 9 0.8214 -2.6804 1.2176 19 9 0.5178 -2.5022 -1.0397 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 1.9926 3.2440 0.0034 24 1 0.5424 2.3960 -0.0090 25 1 5.3255 0.1727 0.0113 26 1 6.9313 -1.3485 -1.6945 27 1 2.1786 -3.3072 -0.1706 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238529208.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:49 Heat of formation + Delta-G solvation = -98.899907 kcal Electronic energy + Delta-G solvation = -15943.176278 eV Core-core repulsion = 12949.138833 eV Total energy + Delta-G solvation = -2994.037444 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.83419 -47.76071 -40.64532 -36.54941 -34.53635 -34.50702 -31.38544 -28.65588 -26.72971 -26.50418 -22.55185 -22.38382 -19.28174 -18.69912 -18.28730 -18.01680 -17.37554 -16.88939 -16.08439 -15.25741 -15.23482 -15.17119 -14.59545 -14.38221 -14.19102 -13.71876 -13.59409 -13.48446 -13.18244 -12.86529 -12.69679 -12.44707 -11.97259 -11.71338 -11.41864 -10.82773 -10.17923 -9.92272 -8.66573 -8.52766 -6.26564 0.64796 0.93866 1.45142 1.55847 1.58253 2.23761 2.77190 3.03466 3.14172 3.54813 3.60130 3.99487 4.28262 4.35574 4.38028 4.63078 4.79302 4.86960 5.09471 5.21020 5.34411 5.48047 5.66335 6.02060 6.28412 6.61286 6.83817 6.87274 7.07456 7.86691 8.35356 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.026496 B = 0.011338 C = 0.008508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.508093 B = 2468.912392 C = 3290.274610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.145 4.145 3 C 0.276 3.724 4 N -0.855 5.855 5 N -0.534 5.534 6 C 0.065 3.935 7 C 0.030 3.970 8 C -0.489 4.489 9 H 0.088 0.912 10 C 0.037 3.963 11 N -0.833 5.833 12 Si 0.985 3.015 13 H -0.257 1.257 14 H -0.272 1.272 15 H -0.260 1.260 16 C -0.223 4.223 17 C 0.328 3.672 18 F -0.213 7.213 19 F -0.211 7.211 20 H 0.070 0.930 21 H 0.059 0.941 22 H 0.079 0.921 23 H 0.397 0.603 24 H 0.408 0.592 25 H 0.144 0.856 26 H 0.290 0.710 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 -0.953 1.399 5.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.152 4.152 3 C 0.043 3.957 4 N -0.406 5.406 5 N -0.250 5.250 6 C -0.097 4.097 7 C 0.025 3.975 8 C -0.520 4.520 9 H 0.106 0.894 10 C -0.177 4.177 11 N -0.460 5.460 12 Si 0.806 3.194 13 H -0.181 1.181 14 H -0.196 1.196 15 H -0.184 1.184 16 C -0.233 4.233 17 C 0.275 3.725 18 F -0.194 7.194 19 F -0.192 7.192 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.098 0.902 23 H 0.226 0.774 24 H 0.240 0.760 25 H 0.162 0.838 26 H 0.101 0.899 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.704 -0.133 1.262 4.872 hybrid contribution 0.051 -0.830 -0.070 0.834 sum -4.653 -0.962 1.192 4.899 Atomic orbital electron populations 1.20628 0.89661 1.02762 1.02183 1.19647 0.97222 0.91891 1.06424 1.18005 0.87936 0.87082 1.02636 1.41503 1.08133 1.03654 1.87296 1.66819 1.06645 1.33672 1.17842 1.22703 0.98893 0.86532 1.01568 1.18358 0.90654 0.95477 0.93024 1.19556 1.00629 0.96647 1.35122 0.89366 1.26711 0.99114 1.00282 0.91635 1.69803 1.20152 1.32420 1.23631 0.85183 0.76906 0.77690 0.79613 1.18104 1.19638 1.18421 1.20170 0.94444 0.93626 1.15016 1.20209 0.83310 0.98326 0.70697 1.92902 1.84192 1.96507 1.45809 1.92902 1.68463 1.97831 1.60033 0.91152 0.92212 0.90212 0.77422 0.76044 0.83839 0.89884 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.24 8.28 71.24 0.59 -2.65 15 2 C -0.14 -6.34 5.85 -19.90 -0.12 -6.46 15 3 C 0.28 12.30 7.72 133.31 1.03 13.33 15 4 N -0.86 -28.63 8.95 -55.28 -0.49 -29.12 15 5 N -0.53 -26.92 10.37 -191.20 -1.98 -28.91 15 6 C 0.06 3.45 9.85 85.36 0.84 4.30 15 7 C 0.03 1.58 5.56 -21.18 -0.12 1.46 15 8 C -0.49 -24.32 8.21 23.39 0.19 -24.12 15 9 H 0.09 4.06 6.61 -2.91 -0.02 4.04 15 10 C 0.04 1.75 5.25 85.23 0.45 2.20 15 11 N -0.83 -41.81 10.88 21.82 0.24 -41.57 15 12 Si 0.99 35.90 29.57 68.60 2.03 37.93 15 13 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 14 H -0.27 -9.57 7.11 99.48 0.71 -8.86 15 15 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 16 C -0.22 -10.57 5.44 -19.49 -0.11 -10.67 15 17 C 0.33 13.52 4.75 71.24 0.34 13.85 15 18 F -0.21 -8.49 16.12 44.97 0.72 -7.76 15 19 F -0.21 -8.40 15.77 44.97 0.71 -7.69 15 20 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 21 H 0.06 2.07 5.90 -2.38 -0.01 2.06 15 22 H 0.08 2.23 6.55 -2.39 -0.02 2.21 15 23 H 0.40 12.17 8.95 -92.71 -0.83 11.34 15 24 H 0.41 10.96 6.76 -92.71 -0.63 10.33 15 25 H 0.14 7.93 6.23 -2.91 -0.02 7.91 15 26 H 0.29 13.28 8.30 -92.71 -0.77 12.51 15 27 H 0.13 5.09 6.04 -2.39 -0.01 5.07 15 Total: -1.00 -57.98 237.38 4.11 -53.87 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.21 Total: 32.02 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 3.10 Total: -8.77 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -2.24 Total: -99.60 kcal Atomic # 9 Polarization: -16.88 SS G_CDS: 1.43 Total: -15.45 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -57.98 4.11 -53.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238529208.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.034 kcal (2) G-P(sol) polarization free energy of solvation -57.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds