Wall clock time and date at job start Mon Mar 30 2020 03:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86807 * 119.99783 * 2 1 4 4 H 1.48493 * 109.47019 * 239.99645 * 3 2 1 5 5 H 1.48500 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46860 * 119.99848 * 3 2 1 7 7 C 1.40025 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99846 * 152.77849 * 7 2 1 9 9 C 1.40936 * 120.00145 * 332.78316 * 7 2 1 10 10 C 1.35854 * 124.83820 * 341.26757 * 9 7 2 11 11 C 1.51045 * 107.77606 * 179.83452 * 10 9 7 12 12 C 1.50875 * 105.86456 * 0.38454 * 11 10 9 13 13 C 1.37757 * 132.79017 * 179.82824 * 12 11 10 14 14 C 1.38097 * 120.36987 * 180.14867 * 13 12 11 15 15 C 1.39418 * 120.32052 * 359.94160 * 14 13 12 16 16 C 1.38601 * 119.08861 * 359.70009 * 15 14 13 17 17 C 1.39059 * 120.84955 * 0.55041 * 16 15 14 18 18 C 1.51615 * 107.13985 * 180.82633 * 16 15 14 19 19 C 1.54718 * 101.89293 * 15.39191 * 18 16 15 20 20 O 1.36210 * 129.68684 * 179.44139 * 15 14 13 21 21 H 0.97005 * 119.99996 * 174.30235 * 1 2 3 22 22 H 1.07994 * 126.11259 * 359.97438 * 10 9 7 23 23 H 1.09000 * 110.37229 * 241.17809 * 11 10 9 24 24 H 1.09003 * 110.03760 * 119.40944 * 11 10 9 25 25 H 1.07994 * 119.81379 * 0.10859 * 13 12 11 26 26 H 1.08001 * 119.84041 * 179.97438 * 14 13 12 27 27 H 1.09003 * 110.94169 * 133.53779 * 18 16 15 28 28 H 1.09000 * 110.94453 * 257.19866 * 18 16 15 29 29 H 1.08996 * 110.75502 * 93.07308 * 19 18 16 30 30 H 1.09008 * 110.74873 * 216.44185 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.0956 1.6965 -1.2124 5 1 1.2768 2.7465 -0.0006 6 1 3.0955 1.6965 1.2125 7 6 2.0080 -1.2126 0.0005 8 1 2.9983 -1.2645 -0.4273 9 6 1.4205 -2.3654 0.5593 10 6 0.3748 -2.3609 1.4266 11 6 0.0572 -3.7963 1.7734 12 6 1.0518 -4.6350 1.0095 13 6 1.2603 -5.9940 0.9248 14 6 2.2714 -6.4971 0.1300 15 6 3.0911 -5.6343 -0.5962 16 6 2.8726 -4.2682 -0.5134 17 6 1.8594 -3.7554 0.2892 18 6 3.8908 -3.5974 -1.4145 19 6 4.3907 -4.7853 -2.2705 20 8 4.1376 -5.9172 -1.4209 21 1 -0.4850 -0.8359 -0.0834 22 1 -0.1390 -1.4873 1.7995 23 1 -0.9586 -4.0450 1.4663 24 1 0.1752 -3.9564 2.8451 25 1 0.6299 -6.6698 1.4836 26 1 2.4274 -7.5641 0.0702 27 1 3.4187 -2.8388 -2.0388 28 1 4.7046 -3.1674 -0.8305 29 1 3.8201 -4.8616 -3.1960 30 1 5.4564 -4.6896 -2.4791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238543442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:05 Heat of formation + Delta-G solvation = -2.254103 kcal Electronic energy + Delta-G solvation = -15236.283375 eV Core-core repulsion = 12768.373586 eV Total energy + Delta-G solvation = -2467.909789 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59193 -38.17099 -34.87039 -32.71365 -32.07556 -29.16886 -27.35179 -26.90692 -24.11480 -22.48409 -20.97567 -20.32408 -18.87615 -17.35885 -16.41163 -15.72229 -15.40607 -14.25275 -14.03236 -13.54796 -13.39313 -13.18281 -12.63447 -12.45681 -12.26707 -11.70231 -11.29575 -11.15713 -10.97641 -10.73378 -10.63405 -10.36027 -10.17734 -9.93353 -9.47345 -9.13513 -8.53085 -7.46902 -7.10766 -7.02286 -4.30867 1.80639 1.96884 3.13423 3.22477 3.40845 3.66483 3.82698 4.12214 4.50268 4.96392 5.11998 5.25920 5.37797 5.40755 5.50928 5.70388 5.85211 6.02212 6.14228 6.20669 6.31438 6.47030 6.67740 6.70178 6.83556 6.94918 7.05726 7.13934 7.44822 7.71801 7.81482 7.90373 8.14751 8.49988 8.91917 9.09000 10.25028 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.009933 C = 0.007546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.812947 B = 2818.106508 C = 3709.596785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.041 3.959 3 Si 1.060 2.940 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.070 3.930 10 C -0.395 4.395 11 C -0.016 4.016 12 C -0.130 4.130 13 C -0.081 4.081 14 C -0.156 4.156 15 C 0.085 3.915 16 C -0.157 4.157 17 C 0.009 3.991 18 C -0.104 4.104 19 C 0.051 3.949 20 O -0.314 6.314 21 H 0.301 0.699 22 H 0.120 0.880 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 -6.000 -2.090 7.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.180 4.180 3 Si 0.884 3.116 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.068 3.932 10 C -0.417 4.417 11 C -0.052 4.052 12 C -0.130 4.130 13 C -0.099 4.099 14 C -0.175 4.175 15 C 0.041 3.959 16 C -0.158 4.158 17 C 0.009 3.991 18 C -0.141 4.141 19 C -0.024 4.024 20 O -0.229 6.229 21 H 0.115 0.885 22 H 0.138 0.862 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.522 -4.566 -2.078 6.754 hybrid contribution 0.213 -1.583 -0.149 1.604 sum 4.735 -6.148 -2.228 8.074 Atomic orbital electron populations 1.70374 1.08287 1.34518 1.29689 1.26770 0.95702 1.03608 0.91968 0.83725 0.75703 0.74429 0.77706 1.20477 1.20052 1.20219 1.20051 1.03533 0.94328 1.36749 0.91367 1.17855 0.93762 0.88077 0.93555 1.22853 1.11679 0.93614 1.13550 1.19295 0.95192 0.93875 0.96857 1.20702 0.99567 0.92721 1.00000 1.19948 0.97323 0.93887 0.98783 1.19939 0.97005 0.98152 1.02358 1.19340 0.89246 0.93130 0.94173 1.20388 0.99452 0.92829 1.03085 1.19679 0.91261 0.96215 0.91982 1.21715 0.97498 0.97870 0.97042 1.23794 1.01589 0.83795 0.93235 1.86747 1.46717 1.40460 1.48951 0.88475 0.86184 0.92495 0.92406 0.86132 0.86280 0.88802 0.89770 0.91151 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.97 12.50 55.55 0.69 -21.28 16 2 C 0.04 1.06 5.16 -17.33 -0.09 0.97 16 3 Si 1.06 22.20 30.01 -169.99 -5.10 17.10 16 4 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.52 -13.90 9.09 -37.89 -0.34 -14.25 16 8 H 0.07 1.76 6.86 -52.49 -0.36 1.40 16 9 C 0.07 1.86 5.57 -105.61 -0.59 1.28 16 10 C -0.40 -10.26 9.11 -34.99 -0.32 -10.58 16 11 C -0.02 -0.36 6.73 -28.78 -0.19 -0.55 16 12 C -0.13 -2.87 6.35 -104.26 -0.66 -3.53 16 13 C -0.08 -1.52 10.00 -39.81 -0.40 -1.92 16 14 C -0.16 -2.87 10.07 -39.19 -0.39 -3.26 16 15 C 0.09 1.71 7.03 -39.01 -0.27 1.44 16 16 C -0.16 -3.42 6.26 -103.73 -0.65 -4.07 16 17 C 0.01 0.21 6.14 -105.03 -0.64 -0.43 16 18 C -0.10 -1.91 6.17 -26.53 -0.16 -2.07 16 19 C 0.05 0.77 8.01 38.06 0.30 1.08 16 20 O -0.31 -5.74 11.11 -20.41 -0.23 -5.96 16 21 H 0.30 8.43 6.59 -40.82 -0.27 8.16 16 22 H 0.12 3.26 6.85 -52.49 -0.36 2.90 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 27 H 0.09 1.74 7.89 -51.93 -0.41 1.34 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 255.63 15.07 3.85 3.85 Total: -1.00 -29.02 255.63 -8.35 -37.37 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.15 Total: 4.83 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: -4.42 Total: -35.91 kcal Atomic # 7 Polarization: -21.97 SS G_CDS: 0.69 Total: -21.28 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.23 Total: -5.96 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.10 Total: 17.10 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.02 -8.35 -37.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238543442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.115 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds