Wall clock time and date at job start Mon Mar 30 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31992 * 119.27230 * 2 1 4 4 C 1.32242 * 121.86253 * 180.02562 * 3 2 1 5 5 N 1.38092 * 119.90619 * 180.02562 * 4 3 2 6 6 C 1.41749 * 120.19104 * 359.97438 * 4 3 2 7 7 C 1.41019 * 120.70804 * 180.02562 * 6 4 3 8 8 H 1.08005 * 119.99890 * 27.73418 * 7 6 4 9 9 C 1.39939 * 119.99950 * 207.72985 * 7 6 4 10 10 N 1.30863 * 120.00199 * 12.23383 * 9 7 6 11 11 Si 1.86802 * 120.00040 * 192.22795 * 9 7 6 12 12 H 1.48502 * 109.47083 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47034 * 120.00485 * 11 9 7 14 14 H 1.48497 * 109.47270 * 240.00321 * 11 9 7 15 15 C 1.40969 * 118.58521 * 359.97438 * 6 4 3 16 16 C 1.38054 * 118.27923 * 0.02562 * 15 6 4 17 17 C 1.50698 * 120.18448 * 180.02562 * 16 15 6 18 18 F 1.39900 * 109.47322 * 119.99931 * 17 16 15 19 19 F 1.39902 * 109.47136 * 240.00165 * 17 16 15 20 20 H 1.09000 * 109.47202 * 270.02198 * 1 2 3 21 21 H 1.08995 * 109.46831 * 30.02828 * 1 2 3 22 22 H 1.09009 * 109.47028 * 150.02574 * 1 2 3 23 23 H 0.96997 * 120.00070 * 354.88290 * 5 4 3 24 24 H 0.97001 * 120.00182 * 174.89583 * 5 4 3 25 25 H 0.96999 * 120.00266 * 174.97897 * 10 9 7 26 26 H 1.07991 * 120.85765 * 180.29407 * 15 6 4 27 27 H 1.09009 * 109.46830 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1524 1.1514 0.0000 4 6 3.4735 1.2111 -0.0005 5 7 4.1072 2.4381 0.0001 6 6 4.2410 0.0194 -0.0005 7 6 5.6503 0.0704 -0.0005 8 1 6.1600 0.9173 0.4348 9 6 6.3883 -0.9763 -0.5644 10 7 5.7886 -1.8786 -1.2984 11 14 8.2297 -1.0855 -0.2697 12 1 8.6617 0.0473 0.5880 13 1 8.5473 -2.3681 0.4080 14 1 8.9438 -1.0226 -1.5702 15 6 3.5655 -1.2179 0.0006 16 6 2.1849 -1.2094 0.0011 17 6 1.4192 -2.5073 0.0028 18 9 0.6147 -2.5726 1.1454 19 9 0.6139 -2.5752 -1.1392 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8903 -0.5135 23 1 3.5864 3.2530 -0.0741 24 1 5.0732 2.4850 0.0744 25 1 6.3093 -2.5618 -1.7488 26 1 4.1137 -2.1483 0.0054 27 1 2.1198 -3.3424 0.0040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238547174.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:08 Heat of formation + Delta-G solvation = -100.911168 kcal Electronic energy + Delta-G solvation = -15784.315767 eV Core-core repulsion = 12790.191108 eV Total energy + Delta-G solvation = -2994.124659 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.86137 -47.78664 -40.53288 -36.18799 -35.54418 -32.93270 -31.56020 -29.88559 -26.78142 -25.33955 -23.17289 -22.21945 -19.25559 -18.72424 -18.03270 -17.63815 -17.39757 -17.33456 -16.38223 -15.43801 -15.27246 -14.78477 -14.60086 -14.20846 -14.08653 -13.70317 -13.49004 -13.39214 -13.14301 -13.01653 -12.65936 -12.29348 -12.12586 -11.53555 -11.19636 -11.14145 -10.13068 -9.90315 -8.66892 -8.51360 -6.20060 0.69322 1.00738 1.44257 1.50845 1.57367 2.23117 2.74153 3.00123 3.12305 3.53563 3.59245 3.96791 4.15508 4.32976 4.44336 4.76982 4.87855 4.97533 5.09050 5.19850 5.35026 5.66729 5.74350 5.99473 6.34423 6.66877 6.84456 6.95536 7.06631 7.83576 8.39346 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.029681 B = 0.009839 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.130789 B = 2845.111628 C = 3549.867011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.068 3.932 3 N -0.553 5.553 4 C 0.320 3.680 5 N -0.840 5.840 6 C -0.012 4.012 7 C -0.476 4.476 8 H 0.087 0.913 9 C 0.032 3.968 10 N -0.836 5.836 11 Si 0.986 3.014 12 H -0.255 1.255 13 H -0.271 1.271 14 H -0.271 1.271 15 C -0.107 4.107 16 C -0.255 4.255 17 C 0.331 3.669 18 F -0.209 7.209 19 F -0.210 7.210 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.398 0.602 24 H 0.410 0.590 25 H 0.287 0.713 26 H 0.125 0.875 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 -0.189 1.701 2.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 N -0.272 5.272 4 C 0.079 3.921 5 N -0.387 5.387 6 C -0.019 4.019 7 C -0.507 4.507 8 H 0.105 0.895 9 C -0.181 4.181 10 N -0.463 5.463 11 Si 0.807 3.193 12 H -0.178 1.178 13 H -0.196 1.196 14 H -0.197 1.197 15 C -0.133 4.133 16 C -0.261 4.261 17 C 0.277 3.723 18 F -0.191 7.191 19 F -0.191 7.191 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.091 0.909 23 H 0.227 0.773 24 H 0.241 0.759 25 H 0.098 0.902 26 H 0.143 0.857 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.576 0.262 1.615 2.272 hybrid contribution 1.285 -0.545 -0.128 1.402 sum -0.291 -0.282 1.486 1.541 Atomic orbital electron populations 1.20601 0.88794 1.02792 1.02200 1.20449 0.96306 0.86945 1.03071 1.66580 1.08523 1.29821 1.22264 1.18966 0.88014 0.87706 0.97411 1.41534 1.09581 1.03440 1.84162 1.18235 0.95073 0.90467 0.98142 1.19444 0.90498 1.05544 1.35251 0.89505 1.26658 1.05548 0.93426 0.92497 1.69806 1.39829 1.13718 1.22935 0.85084 0.76025 0.79280 0.78873 1.17837 1.19601 1.19656 1.21184 0.91058 0.98774 1.02296 1.20723 0.95393 0.94827 1.15154 1.20230 0.83717 0.98093 0.70302 1.92930 1.76680 1.97614 1.51828 1.92885 1.76581 1.97417 1.52226 0.91223 0.91406 0.90921 0.77343 0.75873 0.90239 0.85748 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 9.12 71.24 0.65 -2.63 15 2 C 0.07 3.12 6.76 42.63 0.29 3.41 15 3 N -0.55 -26.57 10.27 -179.56 -1.84 -28.42 15 4 C 0.32 15.35 7.79 134.07 1.04 16.39 15 5 N -0.84 -32.38 8.96 -54.39 -0.49 -32.87 15 6 C -0.01 -0.61 5.58 -21.06 -0.12 -0.72 15 7 C -0.48 -23.24 8.51 23.36 0.20 -23.04 15 8 H 0.09 3.91 6.71 -2.91 -0.02 3.89 15 9 C 0.03 1.50 5.25 85.25 0.45 1.95 15 10 N -0.84 -41.05 10.90 21.83 0.24 -40.81 15 11 Si 0.99 35.62 29.58 68.60 2.03 37.65 15 12 H -0.26 -8.84 7.11 99.48 0.71 -8.13 15 13 H -0.27 -9.64 7.11 99.48 0.71 -8.93 15 14 H -0.27 -9.59 7.11 99.48 0.71 -8.88 15 15 C -0.11 -5.36 8.38 22.90 0.19 -5.16 15 16 C -0.26 -11.79 5.38 -19.81 -0.11 -11.89 15 17 C 0.33 12.67 4.94 71.24 0.35 13.03 15 18 F -0.21 -7.79 16.43 44.97 0.74 -7.05 15 19 F -0.21 -8.05 15.33 44.97 0.69 -7.36 15 20 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 21 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.07 2.65 5.45 -2.38 -0.01 2.63 15 23 H 0.40 13.26 8.95 -92.71 -0.83 12.43 15 24 H 0.41 14.54 7.07 -92.71 -0.66 13.88 15 25 H 0.29 12.83 8.30 -92.71 -0.77 12.06 15 26 H 0.12 6.32 6.24 -2.92 -0.02 6.30 15 27 H 0.13 4.35 7.91 -2.38 -0.02 4.33 15 Total: -1.00 -57.19 241.41 4.07 -53.12 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -0.24 Total: 34.43 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 2.95 Total: -8.68 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -2.09 Total: -102.10 kcal Atomic # 9 Polarization: -15.84 SS G_CDS: 1.43 Total: -14.41 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.03 Total: 37.65 kcal Total: -57.19 4.07 -53.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238547174.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.792 kcal (2) G-P(sol) polarization free energy of solvation -57.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds