Wall clock time and date at job start Mon Mar 30 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38507 * 120.15077 * 2 1 4 4 C 1.39256 * 118.51233 * 180.28371 * 3 2 1 5 5 N 1.38549 * 120.61509 * 179.75899 * 4 3 2 6 6 C 1.41566 * 118.77443 * 359.49103 * 4 3 2 7 7 C 1.40899 * 119.92095 * 180.25142 * 6 4 3 8 8 H 1.08003 * 119.99132 * 353.19491 * 7 6 4 9 9 C 1.40050 * 120.00262 * 173.19323 * 7 6 4 10 10 N 1.30764 * 120.00167 * 6.17511 * 9 7 6 11 11 Si 1.86801 * 119.99822 * 186.17741 * 9 7 6 12 12 H 1.48493 * 109.47122 * 94.98823 * 11 9 7 13 13 H 1.48504 * 109.46990 * 214.98776 * 11 9 7 14 14 H 1.48498 * 109.47112 * 334.98404 * 11 9 7 15 15 N 1.33690 * 120.16998 * 0.22049 * 6 4 3 16 16 C 1.31351 * 121.58654 * 0.03235 * 15 6 4 17 17 C 1.50699 * 119.36848 * 179.97438 * 16 15 6 18 18 F 1.39905 * 109.47034 * 119.99551 * 17 16 15 19 19 F 1.39899 * 109.47210 * 239.99822 * 17 16 15 20 20 H 1.09002 * 109.46771 * 270.27670 * 1 2 3 21 21 H 1.09001 * 109.47290 * 30.27766 * 1 2 3 22 22 H 1.08997 * 109.47250 * 150.27989 * 1 2 3 23 23 H 1.07995 * 120.74552 * 0.04375 * 3 2 1 24 24 H 0.97003 * 120.00231 * 179.72753 * 5 4 3 25 25 H 0.97004 * 119.99595 * 359.44697 * 5 4 3 26 26 H 0.96998 * 120.00473 * 179.97438 * 10 9 7 27 27 H 1.08998 * 109.47400 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2027 1.1977 0.0000 4 6 3.5947 1.1579 -0.0061 5 7 4.3341 2.3296 -0.0113 6 6 4.2404 -0.1019 -0.0009 7 6 5.6478 -0.1704 -0.0015 8 1 6.2320 0.7307 -0.1167 9 6 6.2889 -1.4066 0.1473 10 7 5.5864 -2.5094 0.1654 11 14 8.1474 -1.4801 0.3198 12 1 8.5097 -1.5187 1.7593 13 1 8.6590 -2.7014 -0.3524 14 1 8.7509 -0.2785 -0.3105 15 7 3.5183 -1.2270 0.0051 16 6 2.2051 -1.2017 0.0058 17 6 1.4408 -2.5005 0.0121 18 9 0.6367 -2.5628 1.1553 19 9 0.6352 -2.5730 -1.1293 20 1 -0.3633 0.0050 1.0277 21 1 -0.3634 0.8875 -0.5181 22 1 -0.3633 -0.8925 -0.5095 23 1 1.6774 2.1413 0.0007 24 1 5.3034 2.2915 -0.0115 25 1 3.8824 3.1880 -0.0189 26 1 6.0304 -3.3657 0.2681 27 1 2.1422 -3.3348 0.0159 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238558388.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:18 Heat of formation + Delta-G solvation = -75.828857 kcal Electronic energy + Delta-G solvation = -15828.096293 eV Core-core repulsion = 12835.059285 eV Total energy + Delta-G solvation = -2993.037008 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.19602 -46.13485 -38.59721 -34.29922 -33.72894 -31.66819 -29.05775 -27.58184 -25.73222 -23.42384 -21.52585 -20.06552 -17.76646 -17.03166 -16.37815 -16.02272 -15.53747 -15.27654 -14.65439 -13.60858 -13.47897 -13.13841 -12.70745 -12.56107 -12.40244 -12.04336 -11.90832 -11.57284 -11.40092 -11.23912 -11.01526 -10.64632 -10.27595 -9.99985 -9.76133 -9.32739 -7.87519 -7.78919 -6.78248 -6.47008 -4.35786 2.57978 2.90336 3.06711 3.08683 3.11822 3.91842 4.61112 4.62819 4.97235 5.23872 5.57987 5.69843 6.06664 6.08093 6.13414 6.27061 6.46478 6.54690 6.72710 6.89601 7.09385 7.18092 7.54297 7.78899 8.07687 8.27975 8.65930 8.75608 8.91541 9.94019 10.29464 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.010326 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.931182 B = 2710.871135 C = 3497.910263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.191 4.191 3 C -0.159 4.159 4 C 0.098 3.902 5 N -0.873 5.873 6 C 0.225 3.775 7 C -0.437 4.437 8 H 0.081 0.919 9 C 0.071 3.929 10 N -0.724 5.724 11 Si 0.907 3.093 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.263 1.263 15 N -0.444 5.444 16 C 0.025 3.975 17 C 0.327 3.673 18 F -0.210 7.210 19 F -0.209 7.209 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.101 0.899 24 H 0.394 0.606 25 H 0.380 0.620 26 H 0.272 0.728 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 2.480 0.015 3.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.197 4.197 3 C -0.188 4.188 4 C -0.009 4.009 5 N -0.415 5.415 6 C 0.093 3.907 7 C -0.470 4.470 8 H 0.099 0.901 9 C -0.153 4.153 10 N -0.347 5.347 11 Si 0.731 3.269 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.187 1.187 15 N -0.158 5.158 16 C -0.116 4.116 17 C 0.272 3.728 18 F -0.192 7.192 19 F -0.191 7.191 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.079 0.921 23 H 0.119 0.881 24 H 0.223 0.777 25 H 0.206 0.794 26 H 0.084 0.916 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.741 1.340 0.031 2.198 hybrid contribution 0.444 1.141 0.115 1.230 sum -1.297 2.482 0.147 2.804 Atomic orbital electron populations 1.20587 0.92954 1.01378 1.00455 1.19609 0.94891 0.92936 1.12299 1.20146 0.91631 0.96474 1.10516 1.18942 0.90907 0.88304 1.02766 1.41850 1.08358 1.04387 1.86943 1.18210 0.93626 0.84302 0.94582 1.19164 0.89788 0.94030 1.44052 0.90076 1.25920 1.00152 0.95356 0.93894 1.70087 1.36631 0.98300 1.29692 0.86326 0.82559 0.78859 0.79112 1.19604 1.20155 1.18717 1.68201 1.02684 1.28752 1.16135 1.20809 0.92677 0.91411 1.06750 1.20134 0.83311 0.99305 0.70031 1.92916 1.76639 1.97666 1.51955 1.92871 1.76528 1.97445 1.52247 0.93242 0.93517 0.92107 0.88138 0.77658 0.79392 0.91641 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 8.97 36.01 0.32 -1.54 15 2 C -0.19 -4.38 5.87 -104.25 -0.61 -4.99 15 3 C -0.16 -3.53 9.70 -39.10 -0.38 -3.91 15 4 C 0.10 2.26 6.81 -83.18 -0.57 1.70 15 5 N -0.87 -16.25 8.97 32.79 0.29 -15.96 15 6 C 0.23 5.92 6.56 -84.78 -0.56 5.37 15 7 C -0.44 -11.06 8.86 -37.90 -0.34 -11.40 15 8 H 0.08 1.86 6.16 -52.48 -0.32 1.54 15 9 C 0.07 1.75 5.49 -17.33 -0.10 1.65 15 10 N -0.72 -18.72 11.49 55.55 0.64 -18.08 15 11 Si 0.91 18.03 29.57 -169.99 -5.03 13.00 15 12 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 13 H -0.28 -5.44 7.11 56.52 0.40 -5.04 15 14 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 15 N -0.44 -11.99 7.76 -7.21 -0.06 -12.05 15 16 C 0.03 0.62 6.28 -82.53 -0.52 0.10 15 17 C 0.33 7.04 5.04 36.01 0.18 7.22 15 18 F -0.21 -4.40 16.42 2.25 0.04 -4.37 15 19 F -0.21 -4.36 15.32 2.25 0.03 -4.32 15 20 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.05 0.80 8.09 -51.93 -0.42 0.38 15 22 H 0.06 1.17 5.49 -51.93 -0.28 0.89 15 23 H 0.10 1.95 8.06 -52.49 -0.42 1.52 15 24 H 0.39 7.02 6.85 -40.82 -0.28 6.74 15 25 H 0.38 5.84 8.85 -40.82 -0.36 5.48 15 26 H 0.27 6.40 8.29 -40.82 -0.34 6.06 15 27 H 0.12 2.47 8.10 -51.93 -0.42 2.05 15 LS Contribution 242.44 15.07 3.65 3.65 Total: -1.00 -28.42 242.44 -5.05 -33.47 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -2.07 Total: 10.45 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.56 Total: -5.80 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.88 Total: -46.09 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.42 -5.05 -33.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238558388.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.362 kcal (2) G-P(sol) polarization free energy of solvation -28.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds