Wall clock time and date at job start Mon Mar 30 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38507 * 120.15077 * 2 1 4 4 C 1.39256 * 118.51233 * 180.28371 * 3 2 1 5 5 N 1.38549 * 120.61509 * 179.75899 * 4 3 2 6 6 C 1.41566 * 118.77443 * 359.49103 * 4 3 2 7 7 C 1.40899 * 119.92095 * 180.25142 * 6 4 3 8 8 H 1.08003 * 119.99132 * 353.19491 * 7 6 4 9 9 C 1.40050 * 120.00262 * 173.19323 * 7 6 4 10 10 N 1.30764 * 120.00167 * 6.17511 * 9 7 6 11 11 Si 1.86801 * 119.99822 * 186.17741 * 9 7 6 12 12 H 1.48493 * 109.47122 * 94.98823 * 11 9 7 13 13 H 1.48504 * 109.46990 * 214.98776 * 11 9 7 14 14 H 1.48498 * 109.47112 * 334.98404 * 11 9 7 15 15 N 1.33690 * 120.16998 * 0.22049 * 6 4 3 16 16 C 1.31351 * 121.58654 * 0.03235 * 15 6 4 17 17 C 1.50699 * 119.36848 * 179.97438 * 16 15 6 18 18 F 1.39905 * 109.47034 * 119.99551 * 17 16 15 19 19 F 1.39899 * 109.47210 * 239.99822 * 17 16 15 20 20 H 1.09002 * 109.46771 * 270.27670 * 1 2 3 21 21 H 1.09001 * 109.47290 * 30.27766 * 1 2 3 22 22 H 1.08997 * 109.47250 * 150.27989 * 1 2 3 23 23 H 1.07995 * 120.74552 * 0.04375 * 3 2 1 24 24 H 0.97003 * 120.00231 * 179.72753 * 5 4 3 25 25 H 0.97004 * 119.99595 * 359.44697 * 5 4 3 26 26 H 0.96998 * 120.00473 * 179.97438 * 10 9 7 27 27 H 1.08998 * 109.47400 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2027 1.1977 0.0000 4 6 3.5947 1.1579 -0.0061 5 7 4.3341 2.3296 -0.0113 6 6 4.2404 -0.1019 -0.0009 7 6 5.6478 -0.1704 -0.0015 8 1 6.2320 0.7307 -0.1167 9 6 6.2889 -1.4066 0.1473 10 7 5.5864 -2.5094 0.1654 11 14 8.1474 -1.4801 0.3198 12 1 8.5097 -1.5187 1.7593 13 1 8.6590 -2.7014 -0.3524 14 1 8.7509 -0.2785 -0.3105 15 7 3.5183 -1.2270 0.0051 16 6 2.2051 -1.2017 0.0058 17 6 1.4408 -2.5005 0.0121 18 9 0.6367 -2.5628 1.1553 19 9 0.6352 -2.5730 -1.1293 20 1 -0.3633 0.0050 1.0277 21 1 -0.3634 0.8875 -0.5181 22 1 -0.3633 -0.8925 -0.5095 23 1 1.6774 2.1413 0.0007 24 1 5.3034 2.2915 -0.0115 25 1 3.8824 3.1880 -0.0189 26 1 6.0304 -3.3657 0.2681 27 1 2.1422 -3.3348 0.0159 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238558388.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:17 Heat of formation + Delta-G solvation = -93.961048 kcal Electronic energy + Delta-G solvation = -15828.882564 eV Core-core repulsion = 12835.059285 eV Total energy + Delta-G solvation = -2993.823279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.89647 -47.82700 -40.38035 -36.01594 -35.48386 -33.43927 -30.77690 -29.30885 -27.47195 -25.17424 -23.30032 -21.81438 -19.56843 -18.74643 -18.08051 -17.76323 -17.20586 -16.94798 -16.32657 -15.34062 -15.16598 -14.82193 -14.44064 -14.25392 -14.08478 -13.71992 -13.53029 -13.25888 -13.02519 -12.82786 -12.65922 -12.39704 -11.92219 -11.71365 -11.48576 -11.09988 -9.66582 -9.61347 -8.51435 -8.25941 -6.20613 0.78876 1.12181 1.45116 1.53694 1.57686 2.26740 2.82829 2.88347 3.38510 3.53964 3.75047 4.00779 4.37777 4.39173 4.54008 4.63327 4.81066 4.93475 5.09613 5.20332 5.36909 5.40249 5.78866 6.04783 6.26088 6.56564 6.87225 7.07992 7.35461 8.11625 8.53581 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.010326 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.931182 B = 2710.871135 C = 3497.910263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.190 4.190 3 C -0.171 4.171 4 C 0.098 3.902 5 N -0.856 5.856 6 C 0.185 3.815 7 C -0.466 4.466 8 H 0.096 0.904 9 C 0.024 3.976 10 N -0.767 5.767 11 Si 0.984 3.016 12 H -0.269 1.269 13 H -0.275 1.275 14 H -0.252 1.252 15 N -0.475 5.475 16 C -0.014 4.014 17 C 0.336 3.664 18 F -0.207 7.207 19 F -0.205 7.205 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.133 0.867 24 H 0.399 0.601 25 H 0.399 0.601 26 H 0.276 0.724 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 3.827 0.043 4.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.196 4.196 3 C -0.200 4.200 4 C -0.010 4.010 5 N -0.399 5.399 6 C 0.051 3.949 7 C -0.499 4.499 8 H 0.114 0.886 9 C -0.196 4.196 10 N -0.390 5.390 11 Si 0.805 3.195 12 H -0.195 1.195 13 H -0.200 1.200 14 H -0.175 1.175 15 N -0.189 5.189 16 C -0.154 4.154 17 C 0.282 3.718 18 F -0.188 7.188 19 F -0.187 7.187 20 H 0.078 0.922 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.151 0.849 24 H 0.229 0.771 25 H 0.228 0.772 26 H 0.086 0.914 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.671 2.731 0.056 3.202 hybrid contribution 0.299 0.818 0.100 0.876 sum -1.372 3.548 0.155 3.808 Atomic orbital electron populations 1.20599 0.90428 1.02490 1.01421 1.20124 0.96887 0.92725 1.09909 1.20519 0.91467 0.97662 1.10333 1.19062 0.91734 0.88744 1.01505 1.41745 1.08567 1.04010 1.85605 1.18706 0.94556 0.85538 0.96082 1.19565 0.90070 0.95154 1.45151 0.88607 1.26835 1.04959 0.94712 0.93071 1.70204 1.38732 0.98955 1.31153 0.85162 0.76346 0.79066 0.78903 1.19456 1.20009 1.17512 1.68131 1.03886 1.29882 1.16997 1.21260 0.92598 0.93196 1.08343 1.19934 0.83219 0.98431 0.70225 1.92915 1.76495 1.97604 1.51802 1.92873 1.76357 1.97384 1.52036 0.92209 0.91051 0.92349 0.84938 0.77110 0.77221 0.91371 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.34 8.97 71.24 0.64 -2.70 15 2 C -0.19 -8.48 5.87 -19.62 -0.12 -8.59 15 3 C -0.17 -7.26 9.70 22.58 0.22 -7.04 15 4 C 0.10 4.44 6.81 39.15 0.27 4.71 15 5 N -0.86 -30.11 8.97 -50.18 -0.45 -30.56 15 6 C 0.18 9.79 6.56 40.33 0.26 10.05 15 7 C -0.47 -23.68 8.86 23.36 0.21 -23.48 15 8 H 0.10 4.34 6.16 -2.91 -0.02 4.32 15 9 C 0.02 1.21 5.49 85.29 0.47 1.68 15 10 N -0.77 -40.59 11.49 21.84 0.25 -40.33 15 11 Si 0.98 36.98 29.57 68.60 2.03 39.01 15 12 H -0.27 -9.96 7.11 99.48 0.71 -9.25 15 13 H -0.28 -10.14 7.11 99.48 0.71 -9.44 15 14 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 15 N -0.47 -26.13 7.76 -176.72 -1.37 -27.50 15 16 C -0.01 -0.68 6.28 42.81 0.27 -0.41 15 17 C 0.34 14.53 5.04 71.24 0.36 14.89 15 18 F -0.21 -8.55 16.42 44.97 0.74 -7.81 15 19 F -0.21 -8.43 15.32 44.97 0.69 -7.74 15 20 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.07 2.22 8.09 -2.39 -0.02 2.20 15 22 H 0.06 2.14 5.49 -2.39 -0.01 2.12 15 23 H 0.13 4.66 8.06 -2.91 -0.02 4.64 15 24 H 0.40 13.48 6.85 -92.71 -0.63 12.85 15 25 H 0.40 11.09 8.85 -92.71 -0.82 10.27 15 26 H 0.28 13.30 8.29 -92.71 -0.77 12.53 15 27 H 0.12 5.13 8.10 -2.39 -0.02 5.11 15 Total: -1.00 -60.83 242.44 4.25 -56.59 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.22 Total: 29.23 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 2.58 Total: -10.88 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -1.57 Total: -98.40 kcal Atomic # 9 Polarization: -16.98 SS G_CDS: 1.43 Total: -15.55 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -60.83 4.25 -56.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238558388.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.372 kcal (2) G-P(sol) polarization free energy of solvation -60.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds