Wall clock time and date at job start Mon Mar 30 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86805 * 120.00210 * 2 1 4 4 H 1.48504 * 109.46735 * 275.38505 * 3 2 1 5 5 H 1.48495 * 109.46812 * 35.38231 * 3 2 1 6 6 H 1.48499 * 109.47062 * 155.38864 * 3 2 1 7 7 C 1.39953 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99898 * 342.08725 * 7 2 1 9 9 C 1.41411 * 120.00353 * 162.09443 * 7 2 1 10 10 C 1.41111 * 120.65915 * 330.12481 * 9 7 2 11 11 C 1.38009 * 118.19789 * 180.23648 * 10 9 7 12 12 C 1.50692 * 120.28893 * 179.79271 * 11 10 9 13 13 N 1.46902 * 109.47158 * 269.72109 * 12 11 10 14 14 C 1.38630 * 119.42196 * 359.51580 * 11 10 9 15 15 N 1.32064 * 121.31762 * 0.23246 * 14 11 10 16 16 C 1.31499 * 121.98307 * 0.02562 * 15 14 11 17 17 C 1.50694 * 119.80107 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.47005 * 119.99760 * 17 16 15 19 19 F 1.39900 * 109.47491 * 240.00104 * 17 16 15 20 20 H 0.97000 * 119.99640 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.90089 * 0.02783 * 10 9 7 22 22 H 1.09004 * 109.47152 * 29.72310 * 12 11 10 23 23 H 1.09003 * 109.47351 * 149.71878 * 12 11 10 24 24 H 1.00901 * 111.00054 * 56.04824 * 13 12 11 25 25 H 1.00903 * 111.00073 * 179.97438 * 13 12 11 26 26 H 1.07993 * 119.33965 * 180.25129 * 14 11 10 27 27 H 1.09005 * 109.47096 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3759 2.1121 -1.3940 5 1 1.5012 2.6171 0.8107 6 1 3.5921 1.4099 0.5831 7 6 2.0080 -1.2120 0.0005 8 1 1.5072 -2.1245 0.2886 9 6 3.3707 -1.2419 -0.3759 10 6 3.8811 -0.3106 -1.3051 11 6 5.2177 -0.3891 -1.6400 12 6 5.8111 0.5789 -2.6308 13 7 5.7000 0.0223 -3.9858 14 6 6.0109 -1.3625 -1.0525 15 7 5.5123 -2.2205 -0.1811 16 6 4.2460 -2.1974 0.1726 17 6 3.7289 -3.2006 1.1713 18 9 3.2177 -2.5276 2.2862 19 9 2.7157 -3.9649 0.5827 20 1 -0.4849 0.8401 -0.0004 21 1 3.2424 0.4411 -1.7449 22 1 5.2725 1.5253 -2.5814 23 1 6.8613 0.7457 -2.3915 24 1 4.7413 -0.2013 -4.2073 25 1 6.0909 0.6535 -4.6691 26 1 7.0575 -1.4201 -1.3124 27 1 4.5429 -3.8547 1.4839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238559026.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:40 Heat of formation + Delta-G solvation = -104.395781 kcal Electronic energy + Delta-G solvation = -15861.366380 eV Core-core repulsion = 12867.090617 eV Total energy + Delta-G solvation = -2994.275763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.73746 -47.73323 -40.69216 -36.27486 -35.90544 -33.23987 -32.25594 -28.62741 -27.01594 -24.83285 -24.08525 -21.73725 -19.51389 -18.48503 -18.42363 -18.00021 -17.21407 -16.92841 -16.38903 -15.67156 -15.38026 -14.77204 -14.72374 -14.53266 -14.20950 -14.15185 -14.06070 -13.62842 -13.35284 -13.12177 -12.76760 -12.37343 -12.05823 -11.56553 -11.44659 -10.36495 -10.21670 -9.78392 -9.57403 -9.05882 -6.70762 0.28442 0.65804 1.14163 1.29878 1.38410 1.98577 2.46763 2.95141 3.18718 3.41629 3.86299 3.89243 4.00449 4.20112 4.32082 4.36722 4.42102 4.65209 4.75584 5.03744 5.09372 5.48105 5.51099 5.82743 6.11505 6.14178 6.37553 6.54792 6.61765 7.34161 8.00214 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.015250 C = 0.009793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.552195 B = 1835.647798 C = 2858.426023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.051 3.949 3 Si 0.961 3.039 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.455 4.455 8 H 0.071 0.929 9 C 0.053 3.947 10 C -0.206 4.206 11 C -0.074 4.074 12 C 0.110 3.890 13 N -0.846 5.846 14 C -0.012 4.012 15 N -0.440 5.440 16 C -0.093 4.093 17 C 0.342 3.658 18 F -0.211 7.211 19 F -0.215 7.215 20 H 0.300 0.700 21 H 0.115 0.885 22 H 0.037 0.963 23 H 0.101 0.899 24 H 0.341 0.659 25 H 0.356 0.644 26 H 0.166 0.834 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.111 3.739 -3.387 9.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.168 4.168 3 Si 0.783 3.217 4 H -0.171 1.171 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.483 4.483 8 H 0.089 0.911 9 C 0.048 3.952 10 C -0.233 4.233 11 C -0.076 4.076 12 C -0.021 4.021 13 N -0.377 5.377 14 C -0.172 4.172 15 N -0.147 5.147 16 C -0.234 4.234 17 C 0.288 3.712 18 F -0.192 7.192 19 F -0.197 7.197 20 H 0.111 0.889 21 H 0.133 0.867 22 H 0.055 0.945 23 H 0.120 0.880 24 H 0.153 0.847 25 H 0.171 0.829 26 H 0.183 0.817 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.779 2.612 -2.718 9.554 hybrid contribution -1.693 1.799 -0.367 2.498 sum 7.086 4.411 -3.085 8.899 Atomic orbital electron populations 1.69689 1.09197 1.32161 1.33610 1.26899 0.95426 1.04242 0.90201 0.85561 0.79547 0.76432 0.80130 1.17075 1.19558 1.18229 1.19620 0.93546 0.96486 1.38654 0.91057 1.18423 0.93489 0.92447 0.90832 1.21444 0.96162 1.03582 1.02078 1.20773 0.93225 0.96925 0.96692 1.20642 1.01341 0.92640 0.87500 1.58669 1.25901 1.50561 1.02614 1.22233 1.00397 0.95261 0.99347 1.66622 1.13060 1.23339 1.11683 1.21422 0.90965 1.04736 1.06293 1.19947 0.85129 0.86699 0.79415 1.92930 1.89450 1.82813 1.54033 1.92908 1.65051 1.76422 1.85307 0.88860 0.86721 0.94504 0.88043 0.84659 0.82895 0.81714 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.37 13.93 21.83 0.30 -43.06 15 2 C 0.05 2.62 5.42 85.26 0.46 3.08 15 3 Si 0.96 40.38 24.53 68.60 1.68 42.06 15 4 H -0.25 -9.31 6.71 99.48 0.67 -8.64 15 5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 15 6 H -0.26 -11.36 6.85 99.48 0.68 -10.68 15 7 C -0.45 -25.09 8.27 23.47 0.19 -24.90 15 8 H 0.07 4.32 6.38 -2.91 -0.02 4.31 15 9 C 0.05 2.69 5.09 -21.19 -0.11 2.59 15 10 C -0.21 -9.21 6.96 22.92 0.16 -9.05 15 11 C -0.07 -2.82 5.40 -19.83 -0.11 -2.93 15 12 C 0.11 3.07 6.93 85.55 0.59 3.67 15 13 N -0.85 -21.23 9.61 -190.01 -1.83 -23.05 15 14 C -0.01 -0.49 10.85 84.75 0.92 0.43 15 15 N -0.44 -19.35 10.23 -181.74 -1.86 -21.20 15 16 C -0.09 -4.47 6.34 43.21 0.27 -4.20 15 17 C 0.34 15.04 5.08 71.23 0.36 15.40 15 18 F -0.21 -9.88 16.57 44.97 0.75 -9.13 15 19 F -0.22 -10.13 15.69 44.97 0.71 -9.42 15 20 H 0.30 14.00 8.30 -92.71 -0.77 13.23 15 21 H 0.12 4.95 4.82 -2.91 -0.01 4.94 15 22 H 0.04 0.99 8.09 -2.38 -0.02 0.97 15 23 H 0.10 2.39 8.09 -2.39 -0.02 2.37 15 24 H 0.34 9.04 8.99 -89.69 -0.81 8.24 15 25 H 0.36 6.51 9.08 -89.69 -0.81 5.70 15 26 H 0.17 5.31 8.06 -2.91 -0.02 5.29 15 27 H 0.14 5.07 8.11 -2.38 -0.02 5.06 15 Total: -1.00 -60.93 241.49 2.05 -58.87 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -0.45 Total: 20.86 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 2.75 Total: -15.91 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -3.38 Total: -87.32 kcal Atomic # 9 Polarization: -20.01 SS G_CDS: 1.45 Total: -18.56 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.68 Total: 42.06 kcal Total: -60.93 2.05 -58.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238559026.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.522 kcal (2) G-P(sol) polarization free energy of solvation -60.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds