Wall clock time and date at job start Mon Mar 30 2020 03:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48493 * 109.47321 * 239.99471 * 3 2 1 5 5 H 1.48499 * 109.47393 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46815 * 119.99757 * 3 2 1 7 7 C 1.37878 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99522 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00335 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47371 * 300.00014 * 9 7 2 11 11 N 1.46900 * 109.47273 * 60.00008 * 9 7 2 12 12 C 1.50697 * 109.47257 * 179.97438 * 9 7 2 13 13 C 1.38215 * 119.96001 * 265.00069 * 12 9 7 14 14 C 1.38755 * 119.97666 * 179.72316 * 13 12 9 15 15 N 1.39987 * 120.05256 * 179.97438 * 14 13 12 16 16 C 1.39089 * 119.88500 * 0.02562 * 14 13 12 17 17 F 1.35108 * 120.03606 * 179.97438 * 16 14 13 18 18 C 1.38243 * 119.91878 * 359.97438 * 16 14 13 19 19 C 1.38415 * 119.95597 * 84.72576 * 12 9 7 20 20 F 1.35099 * 119.94689 * 0.25280 * 19 12 9 21 21 H 0.96998 * 119.99663 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99895 * 296.04641 * 11 9 7 23 23 H 1.00899 * 110.99915 * 59.99358 * 11 9 7 24 24 H 1.08001 * 120.00509 * 359.74714 * 13 12 9 25 25 H 0.96998 * 120.00606 * 0.02562 * 15 14 13 26 26 H 0.97001 * 119.99571 * 180.02562 * 15 14 13 27 27 H 1.08008 * 119.98715 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 0.4069 -2.5773 -1.1992 12 6 2.2302 -3.6446 0.0005 13 6 2.5995 -4.2371 -1.1924 14 6 3.5055 -5.2880 -1.1933 15 7 3.8801 -5.8896 -2.4005 16 6 4.0399 -5.7433 0.0074 17 9 4.9219 -6.7668 0.0101 18 6 3.6674 -5.1474 1.1979 19 6 2.7632 -4.0983 1.1947 20 9 2.4007 -3.5169 2.3591 21 1 -0.4849 0.8401 0.0004 22 1 -0.3004 -1.8578 -1.1911 23 1 0.9652 -2.5259 -2.0381 24 1 2.1831 -3.8818 -2.1234 25 1 3.5066 -5.5716 -3.2373 26 1 4.5133 -6.6244 -2.4002 27 1 4.0820 -5.4999 2.1309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238589613.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:55 Heat of formation + Delta-G solvation = -71.668435 kcal Electronic energy + Delta-G solvation = -15586.353988 eV Core-core repulsion = 12593.497389 eV Total energy + Delta-G solvation = -2992.856599 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.48358 -47.99159 -38.64648 -35.11867 -33.66305 -31.61133 -29.13981 -27.91308 -25.93873 -23.35963 -22.00506 -20.17481 -17.64744 -17.31384 -16.64297 -16.25272 -15.36977 -15.34324 -15.09269 -14.51025 -14.34861 -13.98235 -13.70701 -12.93136 -12.78442 -12.41731 -12.10987 -11.68047 -11.25943 -11.08815 -10.81705 -10.67842 -10.20782 -9.78816 -9.74448 -8.71509 -8.17961 -7.33609 -7.03404 -6.13176 -4.29594 1.65209 1.81287 3.23293 3.28243 3.31802 4.00259 4.07998 4.33466 4.53225 5.03226 5.08737 5.24724 5.54361 5.74682 6.08001 6.37970 6.41352 6.53788 6.74769 6.90845 7.26232 7.54388 7.70148 7.71731 7.90343 8.00084 8.59324 8.84691 9.02707 9.41471 10.85241 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.034256 B = 0.008196 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.181812 B = 3415.361868 C = 3623.921200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.241 3.759 10 H 0.057 0.943 11 N -0.848 5.848 12 C -0.020 4.020 13 C -0.137 4.137 14 C 0.175 3.825 15 N -0.878 5.878 16 C 0.013 3.987 17 F -0.149 7.149 18 C -0.148 4.148 19 C 0.068 3.932 20 F -0.134 7.134 21 H 0.267 0.733 22 H 0.358 0.642 23 H 0.311 0.689 24 H 0.140 0.860 25 H 0.400 0.600 26 H 0.396 0.604 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 -8.583 -3.132 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.075 0.925 9 C 0.131 3.869 10 H 0.075 0.925 11 N -0.379 5.379 12 C -0.023 4.023 13 C -0.160 4.160 14 C 0.071 3.929 15 N -0.419 5.419 16 C -0.010 4.010 17 F -0.128 7.128 18 C -0.168 4.168 19 C 0.046 3.954 20 F -0.112 7.112 21 H 0.077 0.923 22 H 0.175 0.825 23 H 0.121 0.879 24 H 0.157 0.843 25 H 0.229 0.771 26 H 0.224 0.776 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.229 -9.168 -2.757 10.909 hybrid contribution 1.138 1.672 -0.221 2.035 sum 6.367 -7.496 -2.979 10.276 Atomic orbital electron populations 1.69726 1.05851 1.27462 1.50074 1.24994 0.94967 0.99330 0.94157 0.86526 0.79549 0.82383 0.78822 1.20200 1.21127 1.20027 1.21674 0.93606 0.90662 1.52374 0.92545 1.17936 0.89021 0.87642 0.92308 0.92535 1.59570 1.18326 1.56204 1.03776 1.20449 0.95945 0.95631 0.90257 1.20203 0.99689 0.96815 0.99252 1.17764 0.95496 0.94260 0.85411 1.42240 1.53158 1.41134 1.05359 1.16530 0.98724 0.93090 0.92705 1.91385 1.67001 1.57182 1.97248 1.20653 1.00482 0.97974 0.97712 1.16958 1.00440 0.95871 0.82091 1.91469 1.90530 1.83372 1.45879 0.92293 0.82522 0.87939 0.84284 0.77106 0.77586 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.25 11.54 55.43 0.64 -23.61 15 2 C 0.07 1.82 5.38 -17.82 -0.10 1.72 15 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.54 -14.50 8.71 -34.44 -0.30 -14.80 15 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 15 9 C 0.24 5.95 2.71 -70.02 -0.19 5.76 15 10 H 0.06 1.57 7.79 -51.93 -0.40 1.16 15 11 N -0.85 -19.41 8.78 -6.65 -0.06 -19.47 15 12 C -0.02 -0.44 5.00 -104.57 -0.52 -0.96 15 13 C -0.14 -2.52 9.11 -39.40 -0.36 -2.88 15 14 C 0.17 2.86 6.76 -83.63 -0.57 2.29 15 15 N -0.88 -10.81 9.10 32.48 0.30 -10.52 15 16 C 0.01 0.22 7.31 -39.26 -0.29 -0.06 15 17 F -0.15 -2.35 16.64 2.25 0.04 -2.31 15 18 C -0.15 -2.62 10.00 -39.48 -0.39 -3.01 15 19 C 0.07 1.40 7.24 -39.42 -0.29 1.12 15 20 F -0.13 -2.95 16.56 2.25 0.04 -2.91 15 21 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 22 H 0.36 8.83 7.08 -39.29 -0.28 8.55 15 23 H 0.31 6.58 7.20 -39.29 -0.28 6.30 15 24 H 0.14 2.40 6.28 -52.49 -0.33 2.07 15 25 H 0.40 4.10 8.84 -40.82 -0.36 3.73 15 26 H 0.40 4.26 8.32 -40.82 -0.34 3.92 15 27 H 0.14 2.08 8.06 -52.48 -0.42 1.66 15 LS Contribution 245.33 15.07 3.70 3.70 Total: -1.00 -27.74 245.33 -5.33 -33.07 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -1.96 Total: 17.07 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -3.00 Total: -10.83 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.88 Total: -53.59 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.07 Total: -5.22 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.74 -5.33 -33.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238589613.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.601 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds