Wall clock time and date at job start Mon Mar 30 2020 03:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48493 * 109.47321 * 239.99471 * 3 2 1 5 5 H 1.48499 * 109.47393 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46815 * 119.99757 * 3 2 1 7 7 C 1.37878 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99522 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00335 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47371 * 300.00014 * 9 7 2 11 11 N 1.46900 * 109.47273 * 60.00008 * 9 7 2 12 12 C 1.50697 * 109.47257 * 179.97438 * 9 7 2 13 13 C 1.38215 * 119.96001 * 265.00069 * 12 9 7 14 14 C 1.38755 * 119.97666 * 179.72316 * 13 12 9 15 15 N 1.39987 * 120.05256 * 179.97438 * 14 13 12 16 16 C 1.39089 * 119.88500 * 0.02562 * 14 13 12 17 17 F 1.35108 * 120.03606 * 179.97438 * 16 14 13 18 18 C 1.38243 * 119.91878 * 359.97438 * 16 14 13 19 19 C 1.38415 * 119.95597 * 84.72576 * 12 9 7 20 20 F 1.35099 * 119.94689 * 0.25280 * 19 12 9 21 21 H 0.96998 * 119.99663 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99895 * 296.04641 * 11 9 7 23 23 H 1.00899 * 110.99915 * 59.99358 * 11 9 7 24 24 H 1.08001 * 120.00509 * 359.74714 * 13 12 9 25 25 H 0.96998 * 120.00606 * 0.02562 * 15 14 13 26 26 H 0.97001 * 119.99571 * 180.02562 * 15 14 13 27 27 H 1.08008 * 119.98715 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 0.4069 -2.5773 -1.1992 12 6 2.2302 -3.6446 0.0005 13 6 2.5995 -4.2371 -1.1924 14 6 3.5055 -5.2880 -1.1933 15 7 3.8801 -5.8896 -2.4005 16 6 4.0399 -5.7433 0.0074 17 9 4.9219 -6.7668 0.0101 18 6 3.6674 -5.1474 1.1979 19 6 2.7632 -4.0983 1.1947 20 9 2.4007 -3.5169 2.3591 21 1 -0.4849 0.8401 0.0004 22 1 -0.3004 -1.8578 -1.1911 23 1 0.9652 -2.5259 -2.0381 24 1 2.1831 -3.8818 -2.1234 25 1 3.5066 -5.5716 -3.2373 26 1 4.5133 -6.6244 -2.4002 27 1 4.0820 -5.4999 2.1309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238589613.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:55 Heat of formation + Delta-G solvation = -91.309454 kcal Electronic energy + Delta-G solvation = -15587.205687 eV Core-core repulsion = 12593.497389 eV Total energy + Delta-G solvation = -2993.708297 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.79642 -49.60895 -40.10551 -36.83973 -35.07891 -33.50340 -30.73344 -29.34131 -27.84182 -25.02737 -23.49124 -21.80840 -19.06857 -18.74394 -18.59703 -17.68778 -16.83575 -16.77125 -16.61372 -16.17442 -16.03626 -15.40827 -15.23061 -14.75548 -14.33495 -14.20775 -13.54397 -13.18361 -13.07417 -12.84997 -12.73372 -12.30556 -12.04110 -11.59567 -11.22211 -10.72179 -9.69672 -9.23425 -8.39263 -8.11740 -6.38893 0.20716 0.35250 1.39143 1.40911 1.48706 2.35737 2.64973 2.84495 3.04619 3.14414 3.61949 3.82874 3.97857 4.28703 4.65272 4.70503 4.95241 5.04876 5.16079 5.26597 5.62846 5.73421 5.83688 6.01765 6.45405 6.61727 6.87408 6.95173 7.10921 7.36907 8.81757 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.034256 B = 0.008196 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.181812 B = 3415.361868 C = 3623.921200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.560 4.560 8 H 0.047 0.953 9 C 0.246 3.754 10 H 0.012 0.988 11 N -0.837 5.837 12 C -0.045 4.045 13 C -0.141 4.141 14 C 0.192 3.808 15 N -0.857 5.857 16 C 0.016 3.984 17 F -0.138 7.138 18 C -0.135 4.135 19 C 0.035 3.965 20 F -0.152 7.152 21 H 0.269 0.731 22 H 0.347 0.653 23 H 0.322 0.678 24 H 0.149 0.851 25 H 0.414 0.586 26 H 0.409 0.591 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.130 -9.435 -4.342 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.599 4.599 8 H 0.065 0.935 9 C 0.136 3.864 10 H 0.030 0.970 11 N -0.366 5.366 12 C -0.047 4.047 13 C -0.164 4.164 14 C 0.085 3.915 15 N -0.399 5.399 16 C -0.008 4.008 17 F -0.117 7.117 18 C -0.155 4.155 19 C 0.013 3.987 20 F -0.131 7.131 21 H 0.078 0.922 22 H 0.162 0.838 23 H 0.133 0.867 24 H 0.166 0.834 25 H 0.245 0.755 26 H 0.239 0.761 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.757 -10.058 -4.017 12.766 hybrid contribution 0.716 1.813 0.101 1.952 sum 7.473 -8.245 -3.916 11.797 Atomic orbital electron populations 1.69827 1.06891 1.28188 1.50372 1.25712 0.95768 1.02276 0.93804 0.85591 0.78412 0.78775 0.78742 1.19302 1.20492 1.20389 1.21896 0.93277 0.92088 1.52639 0.93488 1.17636 0.89002 0.88687 0.91097 0.96970 1.59504 1.17918 1.55407 1.03815 1.20262 0.96622 0.95840 0.92006 1.20191 1.00365 0.97410 0.98419 1.17692 0.94001 0.93119 0.86677 1.42233 1.52470 1.40584 1.04583 1.16527 0.98618 0.93093 0.92592 1.91422 1.66499 1.56540 1.97190 1.20798 0.98984 0.96471 0.99227 1.17193 1.02425 0.97640 0.81404 1.91411 1.90976 1.83956 1.46714 0.92167 0.83771 0.86719 0.83353 0.75530 0.76128 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.41 11.54 21.45 0.25 -50.16 15 2 C 0.03 1.35 5.38 84.65 0.46 1.80 15 3 Si 0.96 42.79 29.54 68.60 2.03 44.81 15 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.56 -30.43 8.71 25.60 0.22 -30.20 15 8 H 0.05 2.58 7.74 -2.91 -0.02 2.56 15 9 C 0.25 12.52 2.71 43.42 0.12 12.64 15 10 H 0.01 0.73 7.79 -2.39 -0.02 0.71 15 11 N -0.84 -38.84 8.78 -174.96 -1.54 -40.38 15 12 C -0.04 -1.95 5.00 -19.83 -0.10 -2.05 15 13 C -0.14 -5.00 9.11 22.39 0.20 -4.79 15 14 C 0.19 5.74 6.76 38.17 0.26 6.00 15 15 N -0.86 -17.84 9.10 -51.16 -0.47 -18.31 15 16 C 0.02 0.49 7.31 22.48 0.16 0.66 15 17 F -0.14 -3.83 16.64 44.97 0.75 -3.08 15 18 C -0.13 -4.56 10.00 22.33 0.22 -4.33 15 19 C 0.03 1.46 7.24 22.38 0.16 1.62 15 20 F -0.15 -6.93 16.56 44.97 0.74 -6.18 15 21 H 0.27 14.11 8.31 -92.71 -0.77 13.34 15 22 H 0.35 17.49 7.08 -89.69 -0.63 16.85 15 23 H 0.32 13.57 7.20 -89.69 -0.65 12.92 15 24 H 0.15 4.87 6.28 -2.91 -0.02 4.85 15 25 H 0.41 6.85 8.84 -92.71 -0.82 6.03 15 26 H 0.41 7.04 8.32 -92.71 -0.77 6.27 15 27 H 0.16 4.53 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -59.79 245.33 1.87 -57.92 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -1.60 Total: 34.05 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 1.71 Total: -18.67 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -1.75 Total: -108.85 kcal Atomic # 9 Polarization: -10.76 SS G_CDS: 1.49 Total: -9.27 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -59.79 1.87 -57.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238589613.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.391 kcal (2) G-P(sol) polarization free energy of solvation -59.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds