Wall clock time and date at job start Mon Mar 30 2020 03:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86799 * 120.00267 * 2 1 4 4 H 1.48505 * 109.47116 * 270.00070 * 3 2 1 5 5 H 1.48502 * 109.46711 * 150.00522 * 3 2 1 6 6 H 1.48496 * 109.47262 * 30.00145 * 3 2 1 7 7 C 1.40155 * 119.99481 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99958 * 169.51632 * 7 2 1 9 9 C 1.40446 * 120.00452 * 349.51371 * 7 2 1 10 10 C 1.40525 * 120.71430 * 305.29612 * 9 7 2 11 11 C 1.38159 * 120.42375 * 179.97438 * 10 9 7 12 12 C 1.37667 * 121.79648 * 0.02562 * 11 10 9 13 13 C 1.40653 * 120.79663 * 0.02562 * 12 11 10 14 14 C 1.40507 * 121.16616 * 179.97438 * 13 12 11 15 15 C 1.36336 * 119.76449 * 180.02562 * 14 13 12 16 16 C 1.39077 * 120.93773 * 0.02562 * 15 14 13 17 17 C 1.37692 * 120.71336 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.22210 * 179.97438 * 17 16 15 19 19 O 1.42899 * 109.47205 * 6.45364 * 18 17 16 20 20 C 1.39537 * 119.55680 * 359.71416 * 17 16 15 21 21 H 0.96996 * 120.00555 * 183.40903 * 1 2 3 22 22 H 1.08003 * 119.79292 * 359.96739 * 10 9 7 23 23 H 1.08002 * 119.10061 * 179.97438 * 11 10 9 24 24 H 1.08000 * 119.60425 * 180.02562 * 12 11 10 25 25 H 1.07997 * 120.11772 * 0.03699 * 14 13 12 26 26 H 1.07998 * 119.52986 * 180.02562 * 15 14 13 27 27 H 1.07994 * 119.64755 * 179.97438 * 16 15 14 28 28 H 1.09002 * 109.47178 * 126.45721 * 18 17 16 29 29 H 1.09003 * 109.47481 * 246.45485 * 18 17 16 30 30 H 0.96705 * 113.99816 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 3.5390 1.4399 0.7000 6 1 1.4390 2.6526 0.7000 7 6 2.0080 -1.2138 -0.0005 8 1 3.0746 -1.2217 -0.1707 9 6 1.3234 -2.4201 0.2203 10 6 0.5294 -2.5953 1.3664 11 6 -0.1419 -3.7843 1.5774 12 6 -0.0612 -4.8308 0.6866 13 6 0.7160 -4.7245 -0.4808 14 6 0.8043 -5.7879 -1.3949 15 6 1.5666 -5.6540 -2.5173 16 6 2.2620 -4.4770 -2.7732 17 6 2.1962 -3.4167 -1.8973 18 6 2.9545 -2.1468 -2.1852 19 8 3.5410 -2.2267 -3.4859 20 6 1.4182 -3.5240 -0.7439 21 1 -0.4851 -0.8385 0.0499 22 1 0.4435 -1.7955 2.0871 23 1 -0.7459 -3.8960 2.4658 24 1 -0.6013 -5.7444 0.8866 25 1 0.2701 -6.7079 -1.2092 26 1 1.6315 -6.4736 -3.2176 27 1 2.8600 -4.3938 -3.6686 28 1 2.2710 -1.2986 -2.1463 29 1 3.7394 -2.0153 -1.4403 30 1 4.0455 -1.4414 -3.7388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238727536.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:28 Heat of formation + Delta-G solvation = -22.782785 kcal Electronic energy + Delta-G solvation = -15365.872304 eV Core-core repulsion = 12897.072324 eV Total energy + Delta-G solvation = -2468.799979 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.22586 -36.29709 -35.50114 -33.74991 -31.53004 -29.21945 -28.38557 -26.11123 -24.39588 -21.73995 -21.70988 -19.93422 -17.92622 -16.85361 -16.06205 -15.38178 -14.93566 -14.39188 -14.15079 -13.73810 -13.23019 -13.01013 -12.73743 -12.30848 -12.10485 -11.70362 -11.28416 -11.17664 -10.81147 -10.52121 -10.18142 -10.07879 -9.86422 -9.59086 -9.38200 -9.04944 -8.36410 -7.62323 -7.26293 -6.66402 -4.57645 1.61359 2.15498 2.95033 3.08975 3.18173 3.25511 3.91797 4.04834 4.65897 4.85013 5.23196 5.61745 5.67750 5.90753 6.01851 6.18865 6.20206 6.29544 6.36839 6.44690 6.63592 6.71919 7.02163 7.13671 7.24703 7.28776 7.40816 7.57720 7.65171 7.75827 7.84348 8.02454 8.11489 8.21965 8.49237 8.72250 10.09117 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.012438 C = 0.008543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.783511 B = 2250.696489 C = 3276.792992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.032 3.968 3 Si 1.071 2.929 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.089 0.911 9 C 0.121 3.879 10 C -0.239 4.239 11 C -0.058 4.058 12 C -0.243 4.243 13 C -0.006 4.006 14 C -0.154 4.154 15 C -0.111 4.111 16 C -0.163 4.163 17 C -0.034 4.034 18 C 0.117 3.883 19 O -0.587 6.587 20 C -0.096 4.096 21 H 0.296 0.704 22 H 0.101 0.899 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 -1.804 -2.102 4.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.187 4.187 3 Si 0.895 3.105 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.107 0.893 9 C 0.118 3.882 10 C -0.258 4.258 11 C -0.076 4.076 12 C -0.262 4.262 13 C -0.006 4.006 14 C -0.173 4.173 15 C -0.129 4.129 16 C -0.182 4.182 17 C -0.034 4.034 18 C 0.042 3.958 19 O -0.392 6.392 20 C -0.097 4.097 21 H 0.110 0.890 22 H 0.119 0.881 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.126 0.874 26 H 0.123 0.877 27 H 0.135 0.865 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.198 -0.726 -2.130 3.911 hybrid contribution 0.213 -1.318 0.197 1.349 sum 3.412 -2.044 -1.932 4.422 Atomic orbital electron populations 1.70368 1.07780 1.34127 1.31552 1.26939 0.95934 1.03508 0.92287 0.83528 0.75343 0.73585 0.78052 1.20145 1.20037 1.19848 1.20518 0.97607 0.91713 1.47063 0.89328 1.18720 0.90107 0.90922 0.88428 1.21097 1.08542 0.97492 0.98717 1.20598 0.96312 0.93644 0.97060 1.20457 1.08320 0.99565 0.97865 1.17825 0.95770 0.92672 0.94371 1.20796 1.02403 0.98404 0.95667 1.20586 0.97949 0.97255 0.97145 1.20636 1.03408 0.93306 1.00819 1.19592 0.95612 0.94325 0.93910 1.21725 0.95723 0.96457 0.81942 1.86378 1.72344 1.44529 1.35993 1.19371 0.99933 0.95530 0.94870 0.89014 0.88109 0.88896 0.88412 0.87377 0.87661 0.86462 0.89452 0.92051 0.78207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.28 13.44 55.56 0.75 -20.54 16 2 C 0.03 0.78 5.24 -17.30 -0.09 0.69 16 3 Si 1.07 20.52 29.95 -169.99 -5.09 15.43 16 4 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 7 C -0.54 -13.15 5.55 -38.03 -0.21 -13.36 16 8 H 0.09 2.05 5.46 -52.48 -0.29 1.77 16 9 C 0.12 3.05 4.89 -104.71 -0.51 2.54 16 10 C -0.24 -5.84 8.16 -38.75 -0.32 -6.15 16 11 C -0.06 -1.29 9.92 -39.82 -0.39 -1.68 16 12 C -0.24 -5.36 9.77 -38.88 -0.38 -5.74 16 13 C -0.01 -0.15 5.74 -106.87 -0.61 -0.76 16 14 C -0.15 -3.15 9.77 -39.41 -0.38 -3.54 16 15 C -0.11 -2.17 9.95 -39.96 -0.40 -2.57 16 16 C -0.16 -3.44 9.37 -39.47 -0.37 -3.81 16 17 C -0.03 -0.78 5.90 -104.34 -0.62 -1.40 16 18 C 0.12 2.41 5.46 36.00 0.20 2.61 16 19 O -0.59 -10.51 12.17 -35.23 -0.43 -10.94 16 20 C -0.10 -2.37 5.90 -104.66 -0.62 -2.99 16 21 H 0.30 8.06 6.54 -40.82 -0.27 7.80 16 22 H 0.10 2.48 8.06 -52.48 -0.42 2.06 16 23 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 24 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 25 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 26 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 27 H 0.12 2.32 7.01 -52.49 -0.37 1.96 16 28 H 0.09 1.93 6.29 -51.93 -0.33 1.61 16 29 H 0.06 1.23 6.31 -51.93 -0.33 0.90 16 30 H 0.37 4.70 9.12 45.56 0.42 5.11 16 LS Contribution 253.52 15.07 3.82 3.82 Total: -1.00 -27.95 253.52 -7.73 -35.68 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -2.07 Total: 12.70 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: -4.71 Total: -36.16 kcal Atomic # 7 Polarization: -21.28 SS G_CDS: 0.75 Total: -20.54 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.43 Total: -10.94 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.09 Total: 15.43 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.95 -7.73 -35.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238727536.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.898 kcal (2) G-P(sol) polarization free energy of solvation -27.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds