Wall clock time and date at job start Mon Mar 30 2020 03:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86799 * 120.00267 * 2 1 4 4 H 1.48505 * 109.47116 * 270.00070 * 3 2 1 5 5 H 1.48502 * 109.46711 * 150.00522 * 3 2 1 6 6 H 1.48496 * 109.47262 * 30.00145 * 3 2 1 7 7 C 1.40155 * 119.99481 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99958 * 169.51632 * 7 2 1 9 9 C 1.40446 * 120.00452 * 349.51371 * 7 2 1 10 10 C 1.40525 * 120.71430 * 305.29612 * 9 7 2 11 11 C 1.38159 * 120.42375 * 179.97438 * 10 9 7 12 12 C 1.37667 * 121.79648 * 0.02562 * 11 10 9 13 13 C 1.40653 * 120.79663 * 0.02562 * 12 11 10 14 14 C 1.40507 * 121.16616 * 179.97438 * 13 12 11 15 15 C 1.36336 * 119.76449 * 180.02562 * 14 13 12 16 16 C 1.39077 * 120.93773 * 0.02562 * 15 14 13 17 17 C 1.37692 * 120.71336 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.22210 * 179.97438 * 17 16 15 19 19 O 1.42899 * 109.47205 * 6.45364 * 18 17 16 20 20 C 1.39537 * 119.55680 * 359.71416 * 17 16 15 21 21 H 0.96996 * 120.00555 * 183.40903 * 1 2 3 22 22 H 1.08003 * 119.79292 * 359.96739 * 10 9 7 23 23 H 1.08002 * 119.10061 * 179.97438 * 11 10 9 24 24 H 1.08000 * 119.60425 * 180.02562 * 12 11 10 25 25 H 1.07997 * 120.11772 * 0.03699 * 14 13 12 26 26 H 1.07998 * 119.52986 * 180.02562 * 15 14 13 27 27 H 1.07994 * 119.64755 * 179.97438 * 16 15 14 28 28 H 1.09002 * 109.47178 * 126.45721 * 18 17 16 29 29 H 1.09003 * 109.47481 * 246.45485 * 18 17 16 30 30 H 0.96705 * 113.99816 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 3.5390 1.4399 0.7000 6 1 1.4390 2.6526 0.7000 7 6 2.0080 -1.2138 -0.0005 8 1 3.0746 -1.2217 -0.1707 9 6 1.3234 -2.4201 0.2203 10 6 0.5294 -2.5953 1.3664 11 6 -0.1419 -3.7843 1.5774 12 6 -0.0612 -4.8308 0.6866 13 6 0.7160 -4.7245 -0.4808 14 6 0.8043 -5.7879 -1.3949 15 6 1.5666 -5.6540 -2.5173 16 6 2.2620 -4.4770 -2.7732 17 6 2.1962 -3.4167 -1.8973 18 6 2.9545 -2.1468 -2.1852 19 8 3.5410 -2.2267 -3.4859 20 6 1.4182 -3.5240 -0.7439 21 1 -0.4851 -0.8385 0.0499 22 1 0.4435 -1.7955 2.0871 23 1 -0.7459 -3.8960 2.4658 24 1 -0.6013 -5.7444 0.8866 25 1 0.2701 -6.7079 -1.2092 26 1 1.6315 -6.4736 -3.2176 27 1 2.8600 -4.3938 -3.6686 28 1 2.2710 -1.2986 -2.1463 29 1 3.7394 -2.0153 -1.4403 30 1 4.0455 -1.4414 -3.7388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238727536.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:27 Heat of formation + Delta-G solvation = -39.383448 kcal Electronic energy + Delta-G solvation = -15366.592163 eV Core-core repulsion = 12897.072324 eV Total energy + Delta-G solvation = -2469.519838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91822 -37.84897 -37.19958 -35.46769 -33.22266 -30.93409 -30.12014 -27.83970 -26.09672 -23.45647 -23.45427 -21.62191 -19.67126 -18.45329 -17.69851 -17.01741 -16.64778 -16.02282 -15.74457 -15.36585 -14.89875 -14.70588 -14.39065 -14.00187 -13.80197 -13.39315 -12.86841 -12.76274 -12.45582 -12.00964 -11.85000 -11.74286 -11.52149 -11.20685 -11.10246 -10.78811 -10.08465 -9.37677 -9.12409 -8.41109 -6.45289 -0.09122 0.41662 1.26183 1.51534 1.62126 1.76943 2.28645 2.38561 2.88840 3.38306 3.47253 4.04076 4.14361 4.28248 4.30730 4.55996 4.59710 4.63267 4.72531 4.78075 4.86384 5.08090 5.32847 5.43364 5.52571 5.59044 5.68651 5.77992 5.86261 5.94800 6.08925 6.25166 6.38018 6.67968 6.92110 6.96793 8.19791 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.012438 C = 0.008543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.783511 B = 2250.696489 C = 3276.792992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C -0.001 4.001 3 Si 1.116 2.884 4 H -0.257 1.257 5 H -0.258 1.258 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.093 0.907 9 C 0.093 3.907 10 C -0.255 4.255 11 C -0.071 4.071 12 C -0.233 4.233 13 C -0.037 4.037 14 C -0.150 4.150 15 C -0.108 4.108 16 C -0.158 4.158 17 C -0.066 4.066 18 C 0.132 3.868 19 O -0.589 6.589 20 C -0.123 4.123 21 H 0.276 0.724 22 H 0.084 0.916 23 H 0.120 0.880 24 H 0.130 0.870 25 H 0.143 0.857 26 H 0.148 0.852 27 H 0.131 0.869 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.466 -3.332 -3.210 6.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.213 4.213 3 Si 0.933 3.067 4 H -0.181 1.181 5 H -0.182 1.182 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.111 0.889 9 C 0.091 3.909 10 C -0.275 4.275 11 C -0.090 4.090 12 C -0.252 4.252 13 C -0.037 4.037 14 C -0.168 4.168 15 C -0.126 4.126 16 C -0.176 4.176 17 C -0.066 4.066 18 C 0.056 3.944 19 O -0.397 6.397 20 C -0.124 4.124 21 H 0.088 0.912 22 H 0.103 0.897 23 H 0.138 0.862 24 H 0.148 0.852 25 H 0.160 0.840 26 H 0.166 0.834 27 H 0.149 0.851 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.932 -2.269 -3.252 5.584 hybrid contribution -0.002 -1.089 0.460 1.182 sum 3.930 -3.358 -2.791 5.875 Atomic orbital electron populations 1.70502 1.08859 1.32722 1.35438 1.28292 0.95769 1.06632 0.90621 0.83011 0.74734 0.69747 0.79161 1.18141 1.18210 1.20396 1.20631 0.97836 0.91978 1.48048 0.88907 1.19062 0.90877 0.91935 0.89044 1.21149 1.09570 0.98104 0.98679 1.20878 0.96615 0.93018 0.98444 1.20893 1.07062 1.00307 0.96899 1.18289 0.96362 0.93320 0.95753 1.21190 1.02023 0.98604 0.94973 1.21048 0.96402 0.97714 0.97449 1.20971 1.02863 0.93305 1.00473 1.19918 0.96536 0.95983 0.94190 1.21333 0.95171 0.94912 0.83024 1.86307 1.72590 1.46312 1.34534 1.19671 1.01070 0.96061 0.95594 0.91177 0.89722 0.86178 0.85185 0.83959 0.83403 0.85110 0.91608 0.92076 0.75468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.48 13.44 21.86 0.29 -46.18 16 2 C 0.00 -0.07 5.24 85.32 0.45 0.38 16 3 Si 1.12 41.73 29.95 68.60 2.05 43.79 16 4 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 5 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 6 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.56 -28.01 5.55 23.27 0.13 -27.88 16 8 H 0.09 4.43 5.46 -2.91 -0.02 4.42 16 9 C 0.09 4.87 4.89 -19.92 -0.10 4.77 16 10 C -0.26 -12.95 8.16 22.81 0.19 -12.77 16 11 C -0.07 -3.18 9.92 22.12 0.22 -2.96 16 12 C -0.23 -9.89 9.77 22.72 0.22 -9.66 16 13 C -0.04 -1.68 5.74 -21.32 -0.12 -1.80 16 14 C -0.15 -5.60 9.77 22.38 0.22 -5.38 16 15 C -0.11 -3.81 9.95 22.03 0.22 -3.59 16 16 C -0.16 -6.28 9.37 22.34 0.21 -6.07 16 17 C -0.07 -3.00 5.90 -19.68 -0.12 -3.11 16 18 C 0.13 5.41 5.46 71.23 0.39 5.80 16 19 O -0.59 -20.13 12.17 -148.98 -1.81 -21.94 16 20 C -0.12 -6.11 5.90 -19.89 -0.12 -6.23 16 21 H 0.28 15.95 6.54 -92.71 -0.61 15.34 16 22 H 0.08 4.42 8.06 -2.91 -0.02 4.40 16 23 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 24 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 25 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 26 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 27 H 0.13 4.79 7.01 -2.91 -0.02 4.77 16 28 H 0.07 2.99 6.29 -2.39 -0.02 2.97 16 29 H 0.06 2.47 6.31 -2.39 -0.02 2.46 16 30 H 0.40 9.19 9.12 -74.05 -0.68 8.51 16 Total: -1.00 -61.70 253.52 2.98 -58.73 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.66 Total: 34.10 kcal Atomic # 6 Polarization: -70.28 SS G_CDS: 1.79 Total: -68.49 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.29 Total: -46.18 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.81 Total: -21.94 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.05 Total: 43.79 kcal Total: -61.70 2.98 -58.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238727536.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.344 kcal (2) G-P(sol) polarization free energy of solvation -61.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds