Wall clock time and date at job start Mon Mar 30 2020 03:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99470 * 2 1 4 4 H 1.48507 * 109.47167 * 240.00085 * 3 2 1 5 5 H 1.48493 * 109.47634 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46909 * 120.00790 * 3 2 1 7 7 C 1.37877 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00074 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.58215 * 301.17124 * 9 7 2 11 11 C 1.54332 * 109.58675 * 61.45470 * 9 7 2 12 12 S 1.83216 * 104.63735 * 147.58316 * 11 9 7 13 13 C 1.82833 * 97.32945 * 357.49225 * 12 11 9 14 14 C 1.54011 * 109.58185 * 181.09774 * 9 7 2 15 15 C 1.52147 * 110.29294 * 95.76825 * 13 12 11 16 16 C 1.53359 * 109.10857 * 177.57993 * 15 13 12 17 17 C 1.53102 * 109.03166 * 304.49246 * 16 15 13 18 18 O 1.42906 * 109.57774 * 58.37879 * 17 16 15 19 19 C 1.43092 * 113.98912 * 298.12537 * 18 17 16 20 20 H 0.96993 * 120.00569 * 359.97438 * 1 2 3 21 21 H 1.08998 * 110.40326 * 28.79538 * 11 9 7 22 22 H 1.09001 * 110.40078 * 266.37252 * 11 9 7 23 23 H 1.08997 * 109.96422 * 74.28778 * 14 9 7 24 24 H 1.09001 * 109.96874 * 313.02719 * 14 9 7 25 25 H 1.09002 * 109.53175 * 57.69043 * 15 13 12 26 26 H 1.08994 * 109.59152 * 297.50840 * 15 13 12 27 27 H 1.09006 * 109.54313 * 184.62702 * 16 15 13 28 28 H 1.09003 * 109.61797 * 64.40277 * 16 15 13 29 29 H 1.09002 * 109.45183 * 178.40832 * 17 16 15 30 30 H 1.08997 * 109.44925 * 298.35632 * 17 16 15 31 31 H 1.08999 * 109.48938 * 299.52449 * 19 18 17 32 32 H 1.09001 * 109.45467 * 179.53601 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6085 -2.5499 0.8783 11 6 0.3902 -2.5995 -1.2775 12 16 0.3575 -4.3879 -1.6745 13 6 1.4545 -4.9469 -0.3228 14 6 2.2494 -3.6715 0.0266 15 6 0.6296 -5.4110 0.8684 16 6 1.5729 -5.9296 1.9607 17 6 2.4649 -7.0253 1.3711 18 8 3.2027 -6.4992 0.2661 19 6 2.3844 -6.0442 -0.8160 20 1 -0.4850 0.8399 0.0004 21 1 0.8499 -2.0381 -2.0908 22 1 -0.6187 -2.2344 -1.0852 23 1 2.6859 -3.7657 1.0209 24 1 3.0350 -3.5087 -0.7112 25 1 -0.0421 -6.2109 0.5571 26 1 0.0465 -4.5760 1.2567 27 1 0.9874 -6.3396 2.7837 28 1 2.1936 -5.1117 2.3268 29 1 3.1578 -7.3793 2.1346 30 1 1.8446 -7.8546 1.0314 31 1 1.7932 -6.8758 -1.1995 32 1 3.0188 -5.6525 -1.6111 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259703786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:03 Heat of formation + Delta-G solvation = -68.256810 kcal Electronic energy + Delta-G solvation = -14561.768196 eV Core-core repulsion = 12226.440267 eV Total energy + Delta-G solvation = -2335.327930 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.33107 -35.64824 -33.23615 -31.79825 -30.18023 -25.70926 -25.27467 -24.88552 -22.79312 -20.48530 -18.31363 -16.74386 -16.39203 -15.70449 -15.25776 -14.73769 -14.49597 -13.87048 -13.38687 -13.18771 -12.65960 -12.48332 -12.01167 -11.54463 -11.37620 -11.13085 -10.99989 -10.79719 -10.64001 -10.35162 -10.22971 -10.04704 -9.59764 -9.32661 -9.06577 -8.89115 -8.45820 -6.97252 -6.16115 -4.21044 2.56654 3.23995 3.30540 3.32645 3.39099 4.15662 4.33406 5.00696 5.08159 5.12887 5.17994 5.20171 5.37501 5.56781 5.78016 5.85652 5.95007 6.03349 6.16168 6.28241 6.38974 6.48801 6.52647 6.67273 6.76330 6.89811 7.33093 7.38241 7.60914 7.81455 8.19715 8.80970 9.44232 10.92626 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.038033 B = 0.008453 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.024719 B = 3311.536828 C = 3585.674840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.044 3.956 10 H 0.038 0.962 11 C -0.013 4.013 12 S -0.366 6.366 13 C -0.040 4.040 14 C -0.101 4.101 15 C -0.098 4.098 16 C -0.155 4.155 17 C 0.060 3.940 18 O -0.378 6.378 19 C 0.091 3.909 20 H 0.264 0.736 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -10.274 1.861 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.024 3.976 10 H 0.056 0.944 11 C -0.160 4.160 12 S -0.136 6.136 13 C -0.150 4.150 14 C -0.139 4.139 15 C -0.137 4.137 16 C -0.194 4.194 17 C -0.017 4.017 18 O -0.297 6.297 19 C 0.013 3.987 20 H 0.074 0.926 21 H 0.096 0.904 22 H 0.109 0.891 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.605 -10.725 0.924 10.884 hybrid contribution 0.500 1.660 0.816 1.916 sum 2.105 -9.065 1.741 9.467 Atomic orbital electron populations 1.69916 1.05956 1.27123 1.49619 1.25015 0.94928 0.99379 0.94591 0.86584 0.79579 0.82698 0.78786 1.20101 1.21207 1.20136 1.21019 0.92981 0.89694 1.51782 0.92149 1.19502 0.92359 0.92933 0.92807 0.94441 1.24396 1.04675 0.84822 1.02133 1.86943 1.66169 1.16370 1.44148 1.23430 0.96591 0.99527 0.95413 1.22556 0.98703 0.91060 1.01603 1.21576 0.96986 1.01389 0.93770 1.22311 0.98847 0.99765 0.98485 1.22549 0.95225 0.94847 0.89083 1.87991 1.33211 1.80978 1.27472 1.22349 0.93078 0.94380 0.88884 0.92621 0.90448 0.89140 0.91227 0.91651 0.91841 0.90316 0.91040 0.90428 0.89231 0.93607 0.93285 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 12.16 55.43 0.67 -23.89 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.61 8.38 -34.44 -0.29 -13.90 16 8 H 0.06 1.58 7.75 -52.49 -0.41 1.17 16 9 C 0.04 1.05 2.21 -90.55 -0.20 0.85 16 10 H 0.04 0.97 7.33 -51.93 -0.38 0.59 16 11 C -0.01 -0.30 5.91 37.86 0.22 -0.07 16 12 S -0.37 -7.44 22.11 -107.50 -2.38 -9.82 16 13 C -0.04 -0.72 0.65 -90.86 -0.06 -0.78 16 14 C -0.10 -2.07 4.47 -25.53 -0.11 -2.18 16 15 C -0.10 -1.60 4.87 -26.98 -0.13 -1.73 16 16 C -0.15 -2.11 5.95 -26.49 -0.16 -2.27 16 17 C 0.06 0.77 6.81 37.21 0.25 1.02 16 18 O -0.38 -5.96 10.67 -35.23 -0.38 -6.34 16 19 C 0.09 1.47 5.63 36.68 0.21 1.68 16 20 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 21 H 0.08 1.92 7.88 -51.93 -0.41 1.51 16 22 H 0.09 2.28 7.69 -51.93 -0.40 1.88 16 23 H 0.07 1.40 6.46 -51.93 -0.34 1.06 16 24 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.08 1.43 7.07 -51.93 -0.37 1.06 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.15 6.70 -51.93 -0.35 0.81 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.62 8.03 -51.93 -0.42 1.20 16 LS Contribution 261.84 15.07 3.95 3.95 Total: -1.00 -27.14 261.84 -8.24 -35.38 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.72 Total: 0.79 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.36 Total: -15.78 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.67 Total: -23.89 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.38 Total: -6.34 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -2.38 Total: -9.82 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.14 -8.24 -35.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259703786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.881 kcal (2) G-P(sol) polarization free energy of solvation -27.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds