Wall clock time and date at job start Mon Mar 30 2020 03:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99470 * 2 1 4 4 H 1.48507 * 109.47167 * 240.00085 * 3 2 1 5 5 H 1.48493 * 109.47634 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46909 * 120.00790 * 3 2 1 7 7 C 1.37877 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00074 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.58215 * 301.17124 * 9 7 2 11 11 C 1.54332 * 109.58675 * 61.45470 * 9 7 2 12 12 S 1.83216 * 104.63735 * 147.58316 * 11 9 7 13 13 C 1.82833 * 97.32945 * 357.49225 * 12 11 9 14 14 C 1.54011 * 109.58185 * 181.09774 * 9 7 2 15 15 C 1.52147 * 110.29294 * 95.76825 * 13 12 11 16 16 C 1.53359 * 109.10857 * 177.57993 * 15 13 12 17 17 C 1.53102 * 109.03166 * 304.49246 * 16 15 13 18 18 O 1.42906 * 109.57774 * 58.37879 * 17 16 15 19 19 C 1.43092 * 113.98912 * 298.12537 * 18 17 16 20 20 H 0.96993 * 120.00569 * 359.97438 * 1 2 3 21 21 H 1.08998 * 110.40326 * 28.79538 * 11 9 7 22 22 H 1.09001 * 110.40078 * 266.37252 * 11 9 7 23 23 H 1.08997 * 109.96422 * 74.28778 * 14 9 7 24 24 H 1.09001 * 109.96874 * 313.02719 * 14 9 7 25 25 H 1.09002 * 109.53175 * 57.69043 * 15 13 12 26 26 H 1.08994 * 109.59152 * 297.50840 * 15 13 12 27 27 H 1.09006 * 109.54313 * 184.62702 * 16 15 13 28 28 H 1.09003 * 109.61797 * 64.40277 * 16 15 13 29 29 H 1.09002 * 109.45183 * 178.40832 * 17 16 15 30 30 H 1.08997 * 109.44925 * 298.35632 * 17 16 15 31 31 H 1.08999 * 109.48938 * 299.52449 * 19 18 17 32 32 H 1.09001 * 109.45467 * 179.53601 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6085 -2.5499 0.8783 11 6 0.3902 -2.5995 -1.2775 12 16 0.3575 -4.3879 -1.6745 13 6 1.4545 -4.9469 -0.3228 14 6 2.2494 -3.6715 0.0266 15 6 0.6296 -5.4110 0.8684 16 6 1.5729 -5.9296 1.9607 17 6 2.4649 -7.0253 1.3711 18 8 3.2027 -6.4992 0.2661 19 6 2.3844 -6.0442 -0.8160 20 1 -0.4850 0.8399 0.0004 21 1 0.8499 -2.0381 -2.0908 22 1 -0.6187 -2.2344 -1.0852 23 1 2.6859 -3.7657 1.0209 24 1 3.0350 -3.5087 -0.7112 25 1 -0.0421 -6.2109 0.5571 26 1 0.0465 -4.5760 1.2567 27 1 0.9874 -6.3396 2.7837 28 1 2.1936 -5.1117 2.3268 29 1 3.1578 -7.3793 2.1346 30 1 1.8446 -7.8546 1.0314 31 1 1.7932 -6.8758 -1.1995 32 1 3.0188 -5.6525 -1.6111 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259703786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:02 Heat of formation + Delta-G solvation = -83.306156 kcal Electronic energy + Delta-G solvation = -14562.420785 eV Core-core repulsion = 12226.440267 eV Total energy + Delta-G solvation = -2335.980518 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61864 -37.32325 -34.88576 -33.29393 -31.77623 -27.53051 -27.10947 -26.14419 -24.07589 -22.23675 -19.78444 -18.53744 -18.01553 -16.96779 -16.67620 -16.37214 -16.13884 -15.30674 -14.87877 -14.80537 -14.36807 -13.85038 -13.56197 -13.10572 -13.08407 -12.87442 -12.81781 -12.37204 -12.12195 -11.93003 -11.69983 -11.57652 -11.36190 -11.00255 -10.78021 -10.49387 -10.34805 -8.65774 -8.21117 -6.33442 0.98092 1.39907 1.41385 1.49526 1.57516 2.38731 3.02295 3.10499 3.64616 3.70628 3.91334 4.07857 4.12388 4.40456 4.46030 4.54134 4.58104 4.69198 4.70628 4.73669 4.91310 4.95149 5.02068 5.05727 5.20712 5.33078 5.45507 5.63092 5.76931 6.17237 6.19996 6.74118 7.35273 8.86537 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.038033 B = 0.008453 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.024719 B = 3311.536828 C = 3585.674840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.044 3.956 10 H 0.010 0.990 11 C -0.009 4.009 12 S -0.352 6.352 13 C -0.032 4.032 14 C -0.092 4.092 15 C -0.099 4.099 16 C -0.149 4.149 17 C 0.055 3.945 18 O -0.389 6.389 19 C 0.097 3.903 20 H 0.264 0.736 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.099 -11.758 2.336 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.077 0.923 9 C 0.024 3.976 10 H 0.028 0.972 11 C -0.157 4.157 12 S -0.122 6.122 13 C -0.142 4.142 14 C -0.130 4.130 15 C -0.138 4.138 16 C -0.188 4.188 17 C -0.021 4.021 18 O -0.308 6.308 19 C 0.019 3.981 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.546 -12.224 1.404 12.565 hybrid contribution 0.191 2.062 0.711 2.189 sum 2.737 -10.163 2.116 10.735 Atomic orbital electron populations 1.70039 1.07250 1.27799 1.50337 1.25774 0.95690 1.02604 0.94225 0.85613 0.78403 0.78738 0.78990 1.19592 1.20910 1.19431 1.21359 0.93146 0.91071 1.51785 0.92320 1.19423 0.92579 0.93792 0.91808 0.97164 1.23967 1.02859 0.87599 1.01306 1.86782 1.67079 1.12933 1.45419 1.23595 0.96307 0.99063 0.95211 1.22384 0.97811 0.91107 1.01699 1.21574 0.97377 1.00990 0.93851 1.22301 0.98499 0.99740 0.98304 1.22814 0.95861 0.94673 0.88762 1.87992 1.33740 1.81032 1.28033 1.22260 0.92756 0.93955 0.89179 0.92666 0.92381 0.91599 0.90790 0.92321 0.90338 0.92846 0.88234 0.91968 0.86623 0.91641 0.91590 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.97 12.16 21.45 0.26 -51.71 16 2 C 0.02 0.94 5.31 84.65 0.45 1.39 16 3 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.53 -28.82 8.38 25.60 0.21 -28.61 16 8 H 0.06 3.11 7.75 -2.91 -0.02 3.08 16 9 C 0.04 2.17 2.21 -10.75 -0.02 2.15 16 10 H 0.01 0.56 7.33 -2.39 -0.02 0.54 16 11 C -0.01 -0.44 5.91 72.43 0.43 -0.01 16 12 S -0.35 -14.18 22.11 -56.49 -1.25 -15.43 16 13 C -0.03 -1.12 0.65 -10.95 -0.01 -1.13 16 14 C -0.09 -3.76 4.47 31.37 0.14 -3.62 16 15 C -0.10 -3.06 4.87 30.43 0.15 -2.91 16 16 C -0.15 -3.67 5.95 30.75 0.18 -3.49 16 17 C 0.06 1.20 6.81 72.02 0.49 1.69 16 18 O -0.39 -11.08 10.67 -148.98 -1.59 -12.67 16 19 C 0.10 2.88 5.63 71.67 0.40 3.29 16 20 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 21 H 0.06 2.99 7.88 -2.39 -0.02 2.97 16 22 H 0.07 3.48 7.69 -2.39 -0.02 3.46 16 23 H 0.07 2.95 6.46 -2.39 -0.02 2.94 16 24 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.05 1.93 7.07 -2.39 -0.02 1.91 16 27 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.06 1.74 6.70 -2.39 -0.02 1.72 16 29 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 2.97 8.03 -2.39 -0.02 2.95 16 Total: -1.00 -58.50 261.84 2.96 -55.53 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.09 Total: 10.72 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 2.43 Total: -31.26 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.26 Total: -51.71 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -1.59 Total: -12.67 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -14.18 SS G_CDS: -1.25 Total: -15.43 kcal Total: -58.50 2.96 -55.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259703786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.772 kcal (2) G-P(sol) polarization free energy of solvation -58.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds