Wall clock time and date at job start Mon Mar 30 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47367 * 2 1 4 4 C 1.50702 * 109.47203 * 239.99966 * 2 1 3 5 5 H 1.07997 * 120.00288 * 245.47642 * 4 2 1 6 6 C 1.37883 * 119.99734 * 65.46395 * 4 2 1 7 7 N 1.31513 * 119.99735 * 9.61430 * 6 4 2 8 8 Si 1.86795 * 119.99985 * 189.60386 * 6 4 2 9 9 H 1.48506 * 109.46879 * 84.99807 * 8 6 4 10 10 H 1.48495 * 109.47363 * 205.00078 * 8 6 4 11 11 H 1.48501 * 109.47407 * 325.00285 * 8 6 4 12 12 C 1.50700 * 109.47484 * 120.00115 * 2 1 3 13 13 C 1.38482 * 119.99615 * 59.99602 * 12 2 1 14 14 F 1.35102 * 119.96280 * 0.28119 * 13 12 2 15 15 C 1.38411 * 120.07686 * 180.02562 * 13 12 2 16 16 C 1.38231 * 120.06839 * 359.97438 * 15 13 12 17 17 C 1.38589 * 119.99339 * 0.02562 * 16 15 13 18 18 O 1.36001 * 120.03910 * 179.97438 * 17 16 15 19 19 C 1.38291 * 119.99838 * 239.99748 * 12 2 1 20 20 F 1.35100 * 120.03257 * 359.97438 * 19 12 2 21 21 H 1.09002 * 109.46631 * 302.93327 * 1 2 3 22 22 H 1.08998 * 109.47074 * 62.92978 * 1 2 3 23 23 H 1.08993 * 109.46974 * 182.93560 * 1 2 3 24 24 H 0.97000 * 119.99356 * 180.02562 * 7 6 4 25 25 H 1.08005 * 119.96695 * 179.97438 * 15 13 12 26 26 H 1.08003 * 120.00492 * 180.02562 * 16 15 13 27 27 H 0.96702 * 114.00015 * 89.99590 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5784 -1.6372 -1.1339 6 6 1.7947 -0.1773 -2.4796 7 7 1.3005 1.0361 -2.5935 8 14 2.1749 -1.1784 -4.0102 9 1 1.0220 -2.0604 -4.3237 10 1 2.4221 -0.2621 -5.1523 11 1 3.3827 -2.0087 -3.7713 12 6 2.0325 -0.7104 1.2304 13 6 1.6979 -2.0362 1.4495 14 9 0.9257 -2.6936 0.5569 15 6 2.1580 -2.6902 2.5793 16 6 2.9529 -2.0214 3.4912 17 6 3.2896 -0.6945 3.2747 18 8 4.0713 -0.0355 4.1715 19 6 2.8276 -0.0383 2.1406 20 9 3.1548 1.2550 1.9272 21 1 -0.3633 0.5587 0.8626 22 1 -0.3633 0.4677 -0.9151 23 1 -0.3633 -1.0263 0.0526 24 1 1.1329 1.4110 -3.4723 25 1 1.8956 -3.7241 2.7486 26 1 3.3117 -2.5328 4.3722 27 1 5.0188 -0.1000 3.9895 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259870195.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:09 Heat of formation + Delta-G solvation = -137.495301 kcal Electronic energy + Delta-G solvation = -15887.713318 eV Core-core repulsion = 12859.709501 eV Total energy + Delta-G solvation = -3028.003817 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.90566 -49.73590 -40.36790 -37.98065 -36.03874 -33.40180 -30.62701 -29.73476 -27.27013 -24.71541 -23.66521 -21.96854 -19.36858 -18.94893 -18.70123 -17.90455 -17.02299 -16.74060 -16.46255 -16.23248 -15.83911 -15.27157 -14.92914 -14.71841 -14.19576 -13.81768 -13.48714 -13.21730 -12.97863 -12.76177 -12.52290 -12.43822 -12.22118 -11.96709 -11.22173 -11.17178 -10.51866 -9.69854 -9.41157 -8.19157 -6.29023 -0.04213 0.12432 1.38633 1.40876 1.49717 2.32788 2.44250 2.95025 3.12142 3.23330 3.54832 3.78870 4.00774 4.20590 4.63836 4.76641 4.89536 4.99690 5.05047 5.10140 5.11667 5.14357 5.49327 5.69243 5.78703 5.86770 6.18362 6.73506 6.76612 7.36950 8.89836 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.032578 B = 0.009604 C = 0.008604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.281468 B = 2914.603275 C = 3253.587105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.070 3.930 3 H 0.013 0.987 4 C -0.521 4.521 5 H 0.053 0.947 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.267 1.267 12 C -0.124 4.124 13 C 0.102 3.898 14 F -0.134 7.134 15 C -0.133 4.133 16 C -0.090 4.090 17 C 0.069 3.931 18 O -0.492 6.492 19 C 0.060 3.940 20 F -0.145 7.145 21 H 0.027 0.973 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.264 0.736 25 H 0.179 0.821 26 H 0.190 0.810 27 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -7.682 11.576 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 H 0.031 0.969 4 C -0.559 4.559 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.192 1.192 12 C -0.126 4.126 13 C 0.083 3.917 14 F -0.113 7.113 15 C -0.152 4.152 16 C -0.108 4.108 17 C 0.023 3.977 18 O -0.305 6.305 19 C 0.041 3.959 20 F -0.124 7.124 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.196 0.804 26 H 0.207 0.793 27 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.538 -7.369 11.664 14.243 hybrid contribution 0.382 0.266 -1.678 1.741 sum 3.920 -7.103 9.987 12.867 Atomic orbital electron populations 1.21635 0.97068 0.99913 0.99315 1.17634 0.93342 0.94721 0.89128 0.96930 1.21196 1.36064 1.07709 0.90944 0.92914 1.25743 0.95086 0.95518 1.02026 1.70093 1.45772 1.15293 1.24609 0.85594 0.78921 0.78679 0.78696 1.19683 1.20740 1.19172 1.20534 0.99109 0.95088 0.97879 1.17534 0.95110 0.89393 0.89693 1.91465 1.72419 1.79956 1.67440 1.21423 0.99216 1.02559 0.91993 1.21362 0.97851 0.91067 1.00505 1.18449 0.98996 0.91917 0.88312 1.84812 1.22814 1.74411 1.48462 1.18095 1.02028 0.79722 0.96096 1.91420 1.91043 1.34902 1.94996 0.95414 0.93607 0.93373 0.92727 0.80381 0.79315 0.72971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.17 8.89 71.98 0.64 -5.53 15 2 C 0.07 3.76 2.23 -12.28 -0.03 3.73 15 3 H 0.01 0.76 7.07 -2.39 -0.02 0.74 15 4 C -0.52 -29.62 7.57 25.60 0.19 -29.43 15 5 H 0.05 2.96 7.42 -2.91 -0.02 2.94 15 6 C 0.02 0.87 5.18 84.66 0.44 1.31 15 7 N -0.92 -54.95 12.16 21.45 0.26 -54.69 15 8 Si 0.96 44.52 29.55 68.60 2.03 46.54 15 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 15 12 C -0.12 -5.51 4.75 -19.79 -0.09 -5.61 15 13 C 0.10 3.88 6.63 22.37 0.15 4.03 15 14 F -0.13 -5.59 14.26 44.97 0.64 -4.95 15 15 C -0.13 -3.50 10.02 22.31 0.22 -3.28 15 16 C -0.09 -2.06 9.98 22.35 0.22 -1.84 15 17 C 0.07 2.06 6.71 22.52 0.15 2.21 15 18 O -0.49 -12.26 13.37 -93.57 -1.25 -13.51 15 19 C 0.06 2.42 7.25 22.45 0.16 2.59 15 20 F -0.14 -6.44 16.03 44.97 0.72 -5.72 15 21 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 22 H 0.04 2.51 6.85 -2.39 -0.02 2.50 15 23 H 0.05 2.30 6.24 -2.39 -0.01 2.29 15 24 H 0.26 14.90 8.31 -92.71 -0.77 14.13 15 25 H 0.18 3.25 8.06 -2.91 -0.02 3.23 15 26 H 0.19 2.55 8.06 -2.91 -0.02 2.53 15 27 H 0.41 6.06 9.06 -74.06 -0.67 5.39 15 Total: -1.00 -69.14 245.12 5.00 -64.13 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 0.54 Total: 0.00 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 2.06 Total: -31.81 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.26 Total: -54.69 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.25 Total: -13.51 kcal Atomic # 9 Polarization: -12.03 SS G_CDS: 1.36 Total: -10.67 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.14 5.00 -64.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870195.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.361 kcal (2) G-P(sol) polarization free energy of solvation -69.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds