Wall clock time and date at job start Mon Mar 30 2020 03:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47004 * 2 1 4 4 C 1.50701 * 109.47204 * 239.99678 * 2 1 3 5 5 H 1.07999 * 119.99827 * 239.99733 * 4 2 1 6 6 C 1.37874 * 120.00129 * 60.00234 * 4 2 1 7 7 N 1.31514 * 119.99934 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00056 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47385 * 89.99781 * 8 6 4 10 10 H 1.48500 * 109.47040 * 209.99722 * 8 6 4 11 11 H 1.48500 * 109.47046 * 329.99546 * 8 6 4 12 12 C 1.50703 * 109.47006 * 119.99340 * 2 1 3 13 13 C 1.38453 * 119.97247 * 240.00120 * 12 2 1 14 14 F 1.35094 * 119.98580 * 359.97438 * 13 12 2 15 15 C 1.38382 * 120.02710 * 180.02562 * 13 12 2 16 16 C 1.38699 * 119.97201 * 359.97438 * 15 13 12 17 17 O 1.35896 * 120.02813 * 179.97438 * 16 15 13 18 18 C 1.38706 * 119.94233 * 0.25974 * 16 15 13 19 19 C 1.38383 * 119.96575 * 359.48704 * 18 16 15 20 20 F 1.35102 * 119.98175 * 180.23716 * 19 18 16 21 21 H 1.08999 * 109.47613 * 300.00587 * 1 2 3 22 22 H 1.08999 * 109.47050 * 60.00271 * 1 2 3 23 23 H 1.09006 * 109.47396 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00397 * 180.02562 * 7 6 4 25 25 H 1.08006 * 120.00948 * 180.02562 * 15 13 12 26 26 H 0.96700 * 114.00170 * 90.00274 * 17 16 15 27 27 H 1.08001 * 120.01934 * 179.72653 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.3428 -2.1619 -4.4117 10 1 2.4866 -0.1417 -5.1122 11 1 3.6294 -1.7585 -3.7120 12 6 2.0323 -0.7103 1.2306 13 6 2.8282 -0.0368 2.1415 14 9 3.1545 1.2564 1.9265 15 6 3.2905 -0.6880 3.2716 16 6 2.9558 -2.0159 3.4918 17 8 3.4096 -2.6567 4.6009 18 6 2.1623 -2.6909 2.5759 19 6 1.6970 -2.0357 1.4493 20 9 0.9203 -2.6915 0.5595 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7082 1.1607 -3.4844 25 1 3.9110 -0.1622 3.9822 26 1 2.8200 -2.5872 5.3642 27 1 1.9046 -3.7262 2.7439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259888979.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:14 Heat of formation + Delta-G solvation = -115.931709 kcal Electronic energy + Delta-G solvation = -15802.256325 eV Core-core repulsion = 12775.187575 eV Total energy + Delta-G solvation = -3027.068750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.42658 -48.23565 -39.23077 -36.59841 -34.09364 -31.21531 -29.95508 -27.81729 -25.17545 -22.90619 -22.42999 -20.15433 -18.63410 -17.21294 -16.48209 -16.12792 -15.40870 -15.24851 -15.09898 -14.64292 -14.52217 -14.28970 -13.33826 -13.12673 -12.54229 -12.08046 -11.62565 -11.40403 -11.24529 -10.89168 -10.80413 -10.74417 -10.38936 -10.10940 -9.62225 -9.09867 -8.39793 -8.37544 -7.93968 -6.03673 -4.10699 1.36778 1.40080 3.30733 3.36738 3.40746 3.68459 4.01349 4.42254 4.75884 4.89261 5.19625 5.20970 5.30719 5.51526 5.86307 6.32615 6.36968 6.47607 6.49975 6.81392 6.97838 7.09478 7.22141 7.62237 7.66327 7.84267 8.02060 8.28942 8.88880 9.53619 11.02405 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.033763 B = 0.009115 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.117403 B = 3071.054014 C = 3350.588117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 H 0.047 0.953 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.110 4.110 13 C 0.130 3.870 14 F -0.128 7.128 15 C -0.196 4.196 16 C 0.131 3.869 17 O -0.493 6.493 18 C -0.198 4.198 19 C 0.152 3.848 20 F -0.115 7.115 21 H 0.008 0.992 22 H 0.090 0.910 23 H 0.037 0.963 24 H 0.262 0.738 25 H 0.138 0.862 26 H 0.389 0.611 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 -3.986 11.304 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.055 3.945 3 H 0.065 0.935 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.112 4.112 13 C 0.111 3.889 14 F -0.106 7.106 15 C -0.215 4.215 16 C 0.087 3.913 17 O -0.303 6.303 18 C -0.218 4.218 19 C 0.132 3.868 20 F -0.093 7.093 21 H 0.027 0.973 22 H 0.109 0.891 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.156 0.844 26 H 0.244 0.756 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.486 -3.987 10.754 11.565 hybrid contribution -0.081 -0.254 -0.693 0.742 sum 1.405 -4.240 10.061 11.008 Atomic orbital electron populations 1.21854 0.96990 1.00188 1.00570 1.17866 0.93415 0.96016 0.87252 0.93481 1.20970 1.31547 1.12350 0.89645 0.92540 1.24905 0.94931 0.94918 0.98927 1.69876 1.36491 1.22764 1.23571 0.86525 0.79341 0.79389 0.82411 1.20519 1.21142 1.19855 1.20907 0.97694 0.93821 0.98767 1.16979 0.98016 0.79372 0.94556 1.91492 1.90725 1.33753 1.94663 1.21215 1.05776 0.95034 0.99501 1.17471 0.95702 0.89331 0.88845 1.84827 1.49298 1.75130 1.21024 1.21303 1.02632 1.01722 0.96137 1.16890 0.92721 0.89700 0.87491 1.91532 1.71333 1.80021 1.66391 0.97296 0.89140 0.94344 0.92826 0.84417 0.75574 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.76 37.16 0.33 -3.06 15 2 C 0.07 1.85 2.36 -92.92 -0.22 1.63 15 3 H 0.05 1.29 7.12 -51.93 -0.37 0.92 15 4 C -0.51 -14.04 7.59 -34.44 -0.26 -14.30 15 5 H 0.06 1.57 7.60 -52.49 -0.40 1.17 15 6 C 0.06 1.80 5.30 -17.82 -0.09 1.71 15 7 N -0.89 -25.34 11.32 55.43 0.63 -24.71 15 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 15 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 12 C -0.11 -2.40 4.75 -104.46 -0.50 -2.89 15 13 C 0.13 2.53 7.24 -39.45 -0.29 2.25 15 14 F -0.13 -2.59 16.19 2.25 0.04 -2.55 15 15 C -0.20 -3.11 9.96 -39.36 -0.39 -3.50 15 16 C 0.13 1.96 6.70 -39.24 -0.26 1.70 15 17 O -0.49 -5.95 13.50 -19.41 -0.26 -6.22 15 18 C -0.20 -3.22 9.96 -39.36 -0.39 -3.61 15 19 C 0.15 3.03 6.69 -39.45 -0.26 2.76 15 20 F -0.11 -2.46 14.37 2.25 0.03 -2.43 15 21 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 15 22 H 0.09 2.41 6.07 -51.93 -0.32 2.10 15 23 H 0.04 0.91 6.30 -51.93 -0.33 0.58 15 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 25 H 0.14 1.84 8.06 -52.48 -0.42 1.42 15 26 H 0.39 2.57 9.06 45.56 0.41 2.98 15 27 H 0.14 1.91 8.06 -52.49 -0.42 1.48 15 LS Contribution 244.28 15.07 3.68 3.68 Total: -1.00 -29.97 244.28 -4.65 -34.62 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -1.40 Total: -1.59 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -2.34 Total: -17.32 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.63 Total: -24.71 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.26 Total: -6.22 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.07 Total: -4.98 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.97 -4.65 -34.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259888979.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.312 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds