Wall clock time and date at job start Mon Mar 30 2020 03:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31037 * 1 3 3 Si 1.86801 * 120.00133 * 2 1 4 4 H 1.48507 * 109.47062 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47197 * 120.00404 * 3 2 1 6 6 H 1.48499 * 109.47267 * 240.00648 * 3 2 1 7 7 C 1.39765 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00248 * 204.37407 * 7 2 1 9 9 C 1.40954 * 119.99726 * 24.37772 * 7 2 1 10 10 C 1.47745 * 126.88986 * 25.07858 * 9 7 2 11 11 N 1.32617 * 133.52692 * 359.97438 * 10 9 7 12 12 C 1.31638 * 121.46443 * 180.02562 * 11 10 9 13 13 C 1.38596 * 121.14205 * 359.97438 * 12 11 10 14 14 C 1.38368 * 119.62878 * 0.02562 * 13 12 11 15 15 C 1.39276 * 118.32665 * 359.97438 * 14 13 12 16 16 N 1.38039 * 133.09382 * 180.02562 * 15 14 13 17 17 H 0.97003 * 124.72774 * 359.97438 * 16 15 14 18 18 C 1.35584 * 110.54161 * 179.74711 * 16 15 14 19 19 C 1.50704 * 125.35743 * 180.27907 * 18 16 15 20 20 C 1.52995 * 117.49423 * 8.77624 * 19 18 16 21 21 C 1.53000 * 60.00120 * 252.51430 * 20 19 18 22 22 H 0.97000 * 119.99639 * 185.82006 * 1 2 3 23 23 H 1.07997 * 119.42626 * 179.97438 * 12 11 10 24 24 H 1.08006 * 120.18359 * 179.97438 * 13 12 11 25 25 H 1.08004 * 120.83159 * 179.97438 * 14 13 12 26 26 H 1.08993 * 115.55168 * 154.48413 * 19 18 16 27 27 H 1.09005 * 117.50075 * 0.02562 * 20 19 18 28 28 H 1.09004 * 117.50136 * 145.02624 * 20 19 18 29 29 H 1.09000 * 117.49464 * 252.51439 * 21 20 19 30 30 H 1.08999 * 117.49963 * 107.49410 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 1.2794 2.7465 0.0006 5 1 3.0982 1.6963 1.2124 6 1 3.0980 1.6965 -1.2126 7 6 2.0093 -1.2104 -0.0005 8 1 3.0171 -1.2522 0.3854 9 6 1.3988 -2.3764 -0.5049 10 6 0.3081 -2.4474 -1.4990 11 7 -0.3785 -1.5315 -2.1687 12 6 -1.3256 -1.8680 -3.0187 13 6 -1.6432 -3.1973 -3.2485 14 6 -0.9559 -4.1913 -2.5746 15 6 0.0424 -3.8141 -1.6796 16 7 0.8981 -4.5285 -0.8654 17 1 0.9202 -5.4961 -0.8007 18 6 1.7067 -3.6893 -0.1723 19 6 2.7697 -4.1141 0.8078 20 6 3.0972 -5.6062 0.8920 21 6 2.3241 -4.9276 2.0246 22 1 -0.4849 -0.8357 0.0852 23 1 -1.8644 -1.0948 -3.5461 24 1 -2.4235 -3.4559 -3.9491 25 1 -1.1878 -5.2333 -2.7385 26 1 3.5900 -3.4098 0.9462 27 1 2.5441 -6.2806 0.2382 28 1 4.1333 -5.8839 1.0858 29 1 2.8516 -4.7588 2.9633 30 1 1.2622 -5.1556 2.1162 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259961401.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:16 Heat of formation + Delta-G solvation = 80.308814 kcal Electronic energy + Delta-G solvation = -15264.833938 eV Core-core repulsion = 12832.797097 eV Total energy + Delta-G solvation = -2432.036841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21692 -37.32803 -35.38849 -33.88284 -31.21120 -28.97610 -28.32243 -24.71542 -23.34973 -22.01273 -21.65252 -20.37451 -19.28761 -17.17668 -16.42108 -15.53611 -15.16693 -14.62398 -13.95606 -13.80139 -13.66814 -12.90155 -12.51279 -12.28289 -11.79319 -11.54064 -11.26051 -11.13699 -10.94966 -10.65083 -10.23106 -9.99801 -9.75054 -9.61083 -9.15711 -8.68530 -8.11135 -7.22820 -7.06457 -6.74982 -3.96567 2.02582 2.45232 3.26914 3.34665 3.53265 3.80485 4.17091 4.29947 4.57641 4.96044 5.19582 5.40095 5.45504 5.54400 5.61209 5.74943 5.81047 5.93156 6.02949 6.19392 6.31862 6.43616 6.49817 6.62064 6.77229 6.97192 7.15529 7.20526 7.83411 8.03751 8.15668 8.32870 8.66172 8.88980 9.14910 9.36555 10.41979 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.014061 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.376907 B = 1990.863398 C = 3418.257529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.039 3.961 3 Si 1.067 2.933 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.078 3.922 10 C 0.065 3.935 11 N -0.404 5.404 12 C 0.028 3.972 13 C -0.157 4.157 14 C -0.130 4.130 15 C 0.058 3.942 16 N -0.572 5.572 17 H 0.392 0.608 18 C -0.123 4.123 19 C -0.017 4.017 20 C -0.201 4.201 21 C -0.189 4.189 22 H 0.292 0.708 23 H 0.137 0.863 24 H 0.118 0.882 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 -6.319 -0.888 6.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.185 4.185 3 Si 0.892 3.108 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.071 3.929 10 C -0.074 4.074 11 N -0.111 5.111 12 C -0.139 4.139 13 C -0.179 4.179 14 C -0.160 4.160 15 C -0.057 4.057 16 N -0.174 5.174 17 H 0.226 0.774 18 C -0.227 4.227 19 C -0.036 4.036 20 C -0.238 4.238 21 C -0.227 4.227 22 H 0.105 0.895 23 H 0.155 0.845 24 H 0.136 0.864 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.018 -3.868 -0.680 4.057 hybrid contribution -0.171 -3.329 -0.220 3.341 sum 0.846 -7.197 -0.900 7.302 Atomic orbital electron populations 1.70376 1.07994 1.33693 1.27006 1.26697 0.95710 1.03563 0.92553 0.83607 0.75476 0.74415 0.77290 1.20175 1.20763 1.20456 1.19606 1.01925 0.93023 1.38901 0.90814 1.17753 0.91371 0.91402 0.92350 1.20409 1.00382 0.86753 0.99828 1.67070 1.03339 1.37454 1.03265 1.22223 0.97833 0.94007 0.99811 1.21525 1.00931 0.94160 1.01253 1.20145 0.97964 0.98687 0.99241 1.19002 0.95853 0.93910 0.96965 1.40627 1.31863 1.06708 1.38239 0.77421 1.18829 1.06135 0.88401 1.09293 1.19891 0.97290 0.91439 0.94980 1.22889 1.00375 0.97346 1.03224 1.22996 0.99872 1.06365 0.93435 0.89483 0.84534 0.86427 0.87175 0.87114 0.90285 0.89354 0.89419 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.87 12.17 55.54 0.68 -21.19 16 2 C 0.04 1.04 5.21 -17.32 -0.09 0.95 16 3 Si 1.07 23.19 29.99 -169.99 -5.10 18.09 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.51 -13.78 8.98 -37.98 -0.34 -14.12 16 8 H 0.07 1.93 7.59 -52.49 -0.40 1.53 16 9 C 0.08 2.09 5.52 -104.74 -0.58 1.52 16 10 C 0.07 1.72 6.06 -82.83 -0.50 1.22 16 11 N -0.40 -10.52 8.50 -9.64 -0.08 -10.60 16 12 C 0.03 0.60 11.17 -17.50 -0.20 0.40 16 13 C -0.16 -2.96 10.09 -39.40 -0.40 -3.36 16 14 C -0.13 -2.55 10.20 -39.15 -0.40 -2.95 16 15 C 0.06 1.32 7.25 -83.87 -0.61 0.72 16 16 N -0.57 -12.09 5.88 -6.13 -0.04 -12.13 16 17 H 0.39 6.89 7.80 -40.82 -0.32 6.57 16 18 C -0.12 -2.86 6.75 -80.69 -0.54 -3.41 16 19 C -0.02 -0.33 5.97 -91.77 -0.55 -0.88 16 20 C -0.20 -3.16 10.12 -26.73 -0.27 -3.43 16 21 C -0.19 -3.19 10.23 -26.73 -0.27 -3.46 16 22 H 0.29 8.67 6.43 -40.82 -0.26 8.41 16 23 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 24 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 25 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 26 H 0.11 2.19 7.76 -51.93 -0.40 1.79 16 27 H 0.08 1.18 7.04 -51.93 -0.37 0.82 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 260.62 15.07 3.93 3.93 Total: -1.00 -30.08 260.62 -8.44 -38.52 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -3.08 Total: 10.20 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -4.75 Total: -26.82 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.56 Total: -43.92 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.10 Total: 18.09 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.08 -8.44 -38.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961401.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.828 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds