Wall clock time and date at job start Mon Mar 30 2020 03:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31037 * 1 3 3 Si 1.86801 * 120.00133 * 2 1 4 4 H 1.48507 * 109.47062 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47197 * 120.00404 * 3 2 1 6 6 H 1.48499 * 109.47267 * 240.00648 * 3 2 1 7 7 C 1.39765 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00248 * 204.37407 * 7 2 1 9 9 C 1.40954 * 119.99726 * 24.37772 * 7 2 1 10 10 C 1.47745 * 126.88986 * 25.07858 * 9 7 2 11 11 N 1.32617 * 133.52692 * 359.97438 * 10 9 7 12 12 C 1.31638 * 121.46443 * 180.02562 * 11 10 9 13 13 C 1.38596 * 121.14205 * 359.97438 * 12 11 10 14 14 C 1.38368 * 119.62878 * 0.02562 * 13 12 11 15 15 C 1.39276 * 118.32665 * 359.97438 * 14 13 12 16 16 N 1.38039 * 133.09382 * 180.02562 * 15 14 13 17 17 H 0.97003 * 124.72774 * 359.97438 * 16 15 14 18 18 C 1.35584 * 110.54161 * 179.74711 * 16 15 14 19 19 C 1.50704 * 125.35743 * 180.27907 * 18 16 15 20 20 C 1.52995 * 117.49423 * 8.77624 * 19 18 16 21 21 C 1.53000 * 60.00120 * 252.51430 * 20 19 18 22 22 H 0.97000 * 119.99639 * 185.82006 * 1 2 3 23 23 H 1.07997 * 119.42626 * 179.97438 * 12 11 10 24 24 H 1.08006 * 120.18359 * 179.97438 * 13 12 11 25 25 H 1.08004 * 120.83159 * 179.97438 * 14 13 12 26 26 H 1.08993 * 115.55168 * 154.48413 * 19 18 16 27 27 H 1.09005 * 117.50075 * 0.02562 * 20 19 18 28 28 H 1.09004 * 117.50136 * 145.02624 * 20 19 18 29 29 H 1.09000 * 117.49464 * 252.51439 * 21 20 19 30 30 H 1.08999 * 117.49963 * 107.49410 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 1.2794 2.7465 0.0006 5 1 3.0982 1.6963 1.2124 6 1 3.0980 1.6965 -1.2126 7 6 2.0093 -1.2104 -0.0005 8 1 3.0171 -1.2522 0.3854 9 6 1.3988 -2.3764 -0.5049 10 6 0.3081 -2.4474 -1.4990 11 7 -0.3785 -1.5315 -2.1687 12 6 -1.3256 -1.8680 -3.0187 13 6 -1.6432 -3.1973 -3.2485 14 6 -0.9559 -4.1913 -2.5746 15 6 0.0424 -3.8141 -1.6796 16 7 0.8981 -4.5285 -0.8654 17 1 0.9202 -5.4961 -0.8007 18 6 1.7067 -3.6893 -0.1723 19 6 2.7697 -4.1141 0.8078 20 6 3.0972 -5.6062 0.8920 21 6 2.3241 -4.9276 2.0246 22 1 -0.4849 -0.8357 0.0852 23 1 -1.8644 -1.0948 -3.5461 24 1 -2.4235 -3.4559 -3.9491 25 1 -1.1878 -5.2333 -2.7385 26 1 3.5900 -3.4098 0.9462 27 1 2.5441 -6.2806 0.2382 28 1 4.1333 -5.8839 1.0858 29 1 2.8516 -4.7588 2.9633 30 1 1.2622 -5.1556 2.1162 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259961401.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:15 Heat of formation + Delta-G solvation = 61.896615 kcal Electronic energy + Delta-G solvation = -15265.632351 eV Core-core repulsion = 12832.797097 eV Total energy + Delta-G solvation = -2432.835254 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.94995 -38.95219 -36.93600 -35.73236 -32.91723 -30.79649 -30.01875 -26.60024 -24.98000 -23.51331 -23.13260 -22.11187 -21.03226 -18.86896 -18.19952 -17.23552 -16.73252 -16.15442 -15.70378 -15.50243 -15.32360 -14.61301 -14.13824 -14.03190 -13.41621 -13.22582 -12.88055 -12.69172 -12.41358 -12.34233 -11.92502 -11.51902 -11.46891 -11.20859 -10.84356 -10.52607 -9.81791 -9.02367 -8.95105 -8.61367 -5.92381 0.37967 0.75901 1.52295 1.56482 1.82302 2.05826 2.46792 2.55234 3.05492 3.20972 3.56499 3.66169 4.02130 4.07730 4.09914 4.29025 4.33162 4.37968 4.68121 4.70944 4.78070 4.95288 5.05992 5.20838 5.24094 5.29188 5.41723 5.53126 6.04399 6.06372 6.21551 6.48309 6.91395 7.06966 7.30513 7.64562 8.41180 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.014061 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.376907 B = 1990.863398 C = 3418.257529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.000 4.000 3 Si 1.115 2.885 4 H -0.278 1.278 5 H -0.259 1.259 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.014 3.986 10 C 0.019 3.981 11 N -0.455 5.455 12 C 0.023 3.977 13 C -0.149 4.149 14 C -0.114 4.114 15 C 0.035 3.965 16 N -0.562 5.562 17 H 0.412 0.588 18 C -0.085 4.085 19 C -0.066 4.066 20 C -0.163 4.163 21 C -0.176 4.176 22 H 0.270 0.730 23 H 0.159 0.841 24 H 0.170 0.830 25 H 0.157 0.843 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.841 -9.103 -1.562 9.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.216 4.216 3 Si 0.934 3.066 4 H -0.203 1.203 5 H -0.183 1.183 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.083 0.917 9 C 0.008 3.992 10 C -0.117 4.117 11 N -0.163 5.163 12 C -0.144 4.144 13 C -0.169 4.169 14 C -0.143 4.143 15 C -0.079 4.079 16 N -0.166 5.166 17 H 0.249 0.751 18 C -0.191 4.191 19 C -0.085 4.085 20 C -0.200 4.200 21 C -0.213 4.213 22 H 0.081 0.919 23 H 0.176 0.824 24 H 0.188 0.812 25 H 0.174 0.826 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.135 0.865 29 H 0.127 0.873 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.906 -6.702 -1.346 6.896 hybrid contribution -0.197 -2.767 -0.110 2.776 sum 0.709 -9.469 -1.455 9.607 Atomic orbital electron populations 1.70495 1.08731 1.31924 1.31775 1.27948 0.95801 1.06609 0.91290 0.83030 0.74588 0.70737 0.78233 1.20322 1.18311 1.20092 1.19659 1.01936 0.94396 1.41914 0.91704 1.18259 0.93777 0.92845 0.94352 1.20576 1.01510 0.88656 1.00940 1.66994 1.05311 1.38949 1.05025 1.22895 0.96619 0.96522 0.98393 1.22023 1.01240 0.92526 1.01142 1.20728 0.95555 1.01240 0.96794 1.19312 0.97313 0.92924 0.98350 1.40556 1.31036 1.07509 1.37452 0.75060 1.19451 1.04520 0.88049 1.07038 1.19975 0.97186 0.94416 0.96968 1.23019 1.02035 0.93574 1.01409 1.23027 1.00180 1.04370 0.93729 0.91925 0.82356 0.81215 0.82577 0.88151 0.88919 0.86487 0.87316 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.95 12.17 21.81 0.27 -48.69 16 2 C 0.00 -0.02 5.21 85.18 0.44 0.42 16 3 Si 1.11 49.34 29.99 68.60 2.06 51.40 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.98 8.98 23.30 0.21 -31.77 16 8 H 0.06 3.66 7.59 -2.91 -0.02 3.63 16 9 C 0.01 0.80 5.52 -19.94 -0.11 0.69 16 10 C 0.02 1.04 6.06 42.06 0.25 1.30 16 11 N -0.45 -24.49 8.50 -184.43 -1.57 -26.06 16 12 C 0.02 0.99 11.17 84.81 0.95 1.93 16 13 C -0.15 -5.06 10.09 22.39 0.23 -4.83 16 14 C -0.11 -4.05 10.20 22.55 0.23 -3.82 16 15 C 0.04 1.57 7.25 38.94 0.28 1.86 16 16 N -0.56 -22.95 5.88 -173.31 -1.02 -23.97 16 17 H 0.41 13.20 7.80 -92.71 -0.72 12.48 16 18 C -0.08 -3.97 6.75 42.14 0.28 -3.69 16 19 C -0.07 -2.55 5.97 -11.54 -0.07 -2.62 16 20 C -0.16 -4.52 10.12 30.59 0.31 -4.21 16 21 C -0.18 -5.48 10.23 30.59 0.31 -5.16 16 22 H 0.27 17.25 6.43 -92.71 -0.60 16.65 16 23 H 0.16 5.73 8.06 -2.91 -0.02 5.71 16 24 H 0.17 4.01 8.06 -2.91 -0.02 3.98 16 25 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 26 H 0.10 4.06 7.76 -2.39 -0.02 4.04 16 27 H 0.09 2.34 7.04 -2.38 -0.02 2.32 16 28 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 29 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -72.02 260.62 3.67 -68.34 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.62 Total: 28.87 kcal Atomic # 6 Polarization: -53.22 SS G_CDS: 3.32 Total: -49.90 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -2.32 Total: -98.71 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.06 Total: 51.40 kcal Total: -72.02 3.67 -68.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259961401.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.239 kcal (2) G-P(sol) polarization free energy of solvation -72.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds