Wall clock time and date at job start Mon Mar 30 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47055 * 2 1 4 4 C 1.50692 * 109.47279 * 240.00082 * 2 1 3 5 5 H 1.08002 * 120.00683 * 239.99894 * 4 2 1 6 6 C 1.37879 * 119.99948 * 59.99883 * 4 2 1 7 7 N 1.31513 * 120.00362 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 120.00024 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47282 * 120.00169 * 8 6 4 11 11 H 1.48504 * 109.46686 * 239.99904 * 8 6 4 12 12 C 1.50699 * 109.46925 * 119.99962 * 2 1 3 13 13 C 1.38735 * 120.01322 * 239.99921 * 12 2 1 14 14 O 1.35898 * 120.02796 * 359.70480 * 13 12 2 15 15 C 1.38684 * 119.93809 * 179.72702 * 13 12 2 16 16 C 1.38398 * 119.97128 * 0.02562 * 15 13 12 17 17 F 1.35097 * 119.98207 * 179.97438 * 16 15 13 18 18 C 1.38437 * 120.03081 * 0.02562 * 16 15 13 19 19 C 1.38354 * 120.01495 * 59.73047 * 12 2 1 20 20 F 1.35094 * 119.98445 * 0.24915 * 19 12 2 21 21 H 1.09003 * 109.47240 * 299.99623 * 1 2 3 22 22 H 1.09000 * 109.47321 * 60.00207 * 1 2 3 23 23 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00139 * 180.02562 * 7 6 4 25 25 H 0.96700 * 113.99377 * 90.00261 * 14 13 12 26 26 H 1.08004 * 120.01067 * 180.02562 * 15 13 12 27 27 H 1.07991 * 119.97003 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 6 2.0323 -0.7104 1.2305 13 6 2.8299 -0.0364 2.1439 14 8 3.1637 1.2629 1.9266 15 6 3.2866 -0.6901 3.2786 16 6 2.9467 -2.0136 3.4980 17 9 3.3919 -2.6506 4.6031 18 6 2.1516 -2.6852 2.5852 19 6 1.6936 -2.0333 1.4525 20 9 0.9166 -2.6898 0.5635 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7089 1.1614 -3.4844 25 1 2.5387 1.8976 2.3029 26 1 3.9073 -0.1664 3.9906 27 1 1.8873 -3.7181 2.7573 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260096520.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:59 Heat of formation + Delta-G solvation = -115.835787 kcal Electronic energy + Delta-G solvation = -15796.770195 eV Core-core repulsion = 12769.705605 eV Total energy + Delta-G solvation = -3027.064590 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.73097 -48.23732 -39.27840 -36.01034 -34.38466 -31.34036 -29.58052 -27.97569 -25.17217 -22.84595 -22.49353 -20.09931 -18.49605 -17.21518 -16.58439 -15.99705 -15.53975 -15.49699 -15.01892 -14.71482 -14.32366 -14.19312 -13.73911 -12.97087 -12.56212 -11.97525 -11.73189 -11.45776 -11.15382 -10.92255 -10.74824 -10.68606 -10.32324 -10.09657 -9.55219 -9.07287 -8.42358 -8.38634 -7.90843 -6.03369 -4.09036 1.33021 1.44937 3.29705 3.37376 3.42511 3.71226 4.08603 4.43268 4.67611 4.94312 5.12410 5.22931 5.31814 5.51511 5.99514 6.16195 6.33831 6.51147 6.56208 6.78569 7.00205 7.10949 7.22458 7.64166 7.86646 7.95097 8.04321 8.31166 8.90555 9.54918 11.02817 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.034262 B = 0.008948 C = 0.008246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.024444 B = 3128.407855 C = 3394.881275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.076 3.924 3 H 0.052 0.948 4 C -0.503 4.503 5 H 0.055 0.945 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 C -0.102 4.102 13 C 0.149 3.851 14 O -0.481 6.481 15 C -0.195 4.195 16 C 0.113 3.887 17 F -0.140 7.140 18 C -0.207 4.207 19 C 0.151 3.849 20 F -0.115 7.115 21 H 0.006 0.994 22 H 0.089 0.911 23 H 0.037 0.963 24 H 0.261 0.739 25 H 0.390 0.610 26 H 0.138 0.862 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 -2.143 10.168 10.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.057 3.943 3 H 0.070 0.930 4 C -0.541 4.541 5 H 0.074 0.926 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.104 3.896 14 O -0.290 6.290 15 C -0.215 4.215 16 C 0.093 3.907 17 F -0.119 7.119 18 C -0.227 4.227 19 C 0.131 3.869 20 F -0.093 7.093 21 H 0.025 0.975 22 H 0.108 0.892 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.246 0.754 26 H 0.156 0.844 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.434 -2.317 9.737 10.111 hybrid contribution -0.069 -0.507 -0.556 0.756 sum 1.364 -2.825 9.181 9.702 Atomic orbital electron populations 1.21892 0.97383 1.00178 1.00400 1.17830 0.92841 0.96341 0.87250 0.93042 1.21008 1.31206 1.12185 0.89701 0.92638 1.24893 0.94980 0.94958 0.98885 1.69874 1.36740 1.22870 1.23387 0.86494 0.78676 0.79737 0.82911 1.19744 1.20931 1.20962 1.21243 0.96341 0.93466 0.99320 1.17661 0.94824 0.85673 0.91478 1.84842 1.51556 1.12712 1.79930 1.21239 1.06077 0.94318 0.99864 1.16785 0.98548 0.90659 0.84664 1.91470 1.87805 1.81950 1.50689 1.20960 1.04122 1.01884 0.95738 1.16916 0.92767 0.90031 0.87201 1.91529 1.71331 1.80109 1.66313 0.97465 0.89196 0.94436 0.92958 0.75412 0.84421 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.76 37.16 0.33 -3.00 15 2 C 0.08 1.85 2.35 -92.93 -0.22 1.64 15 3 H 0.05 1.34 6.99 -51.93 -0.36 0.97 15 4 C -0.50 -13.78 7.60 -34.44 -0.26 -14.04 15 5 H 0.06 1.55 7.61 -52.49 -0.40 1.15 15 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 15 7 N -0.89 -25.02 11.32 55.43 0.63 -24.40 15 8 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 15 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 12 C -0.10 -2.15 4.75 -104.40 -0.50 -2.65 15 13 C 0.15 2.70 6.68 -39.23 -0.26 2.44 15 14 O -0.48 -8.14 12.27 -19.42 -0.24 -8.37 15 15 C -0.20 -3.08 9.96 -39.36 -0.39 -3.48 15 16 C 0.11 1.80 7.30 -39.45 -0.29 1.51 15 17 F -0.14 -2.11 17.27 2.25 0.04 -2.07 15 18 C -0.21 -3.47 10.00 -39.42 -0.39 -3.86 15 19 C 0.15 3.00 6.69 -39.45 -0.26 2.74 15 20 F -0.11 -2.47 14.37 2.25 0.03 -2.43 15 21 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 15 22 H 0.09 2.34 6.07 -51.93 -0.32 2.02 15 23 H 0.04 0.87 6.29 -51.93 -0.33 0.55 15 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 25 H 0.39 4.57 9.06 45.56 0.41 4.99 15 26 H 0.14 1.82 8.06 -52.48 -0.42 1.40 15 27 H 0.14 2.01 8.06 -52.49 -0.42 1.58 15 LS Contribution 244.06 15.07 3.68 3.68 Total: -1.00 -29.36 244.06 -4.62 -33.99 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -1.39 Total: 0.19 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.35 Total: -17.04 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.63 Total: -24.40 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.24 Total: -8.37 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.07 Total: -4.51 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.36 -4.62 -33.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260096520.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.850 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds