Wall clock time and date at job start Mon Mar 30 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47055 * 2 1 4 4 C 1.50692 * 109.47279 * 240.00082 * 2 1 3 5 5 H 1.08002 * 120.00683 * 239.99894 * 4 2 1 6 6 C 1.37879 * 119.99948 * 59.99883 * 4 2 1 7 7 N 1.31513 * 120.00362 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 120.00024 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47282 * 120.00169 * 8 6 4 11 11 H 1.48504 * 109.46686 * 239.99904 * 8 6 4 12 12 C 1.50699 * 109.46925 * 119.99962 * 2 1 3 13 13 C 1.38735 * 120.01322 * 239.99921 * 12 2 1 14 14 O 1.35898 * 120.02796 * 359.70480 * 13 12 2 15 15 C 1.38684 * 119.93809 * 179.72702 * 13 12 2 16 16 C 1.38398 * 119.97128 * 0.02562 * 15 13 12 17 17 F 1.35097 * 119.98207 * 179.97438 * 16 15 13 18 18 C 1.38437 * 120.03081 * 0.02562 * 16 15 13 19 19 C 1.38354 * 120.01495 * 59.73047 * 12 2 1 20 20 F 1.35094 * 119.98445 * 0.24915 * 19 12 2 21 21 H 1.09003 * 109.47240 * 299.99623 * 1 2 3 22 22 H 1.09000 * 109.47321 * 60.00207 * 1 2 3 23 23 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00139 * 180.02562 * 7 6 4 25 25 H 0.96700 * 113.99377 * 90.00261 * 14 13 12 26 26 H 1.08004 * 120.01067 * 180.02562 * 15 13 12 27 27 H 1.07991 * 119.97003 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 6 2.0323 -0.7104 1.2305 13 6 2.8299 -0.0364 2.1439 14 8 3.1637 1.2629 1.9266 15 6 3.2866 -0.6901 3.2786 16 6 2.9467 -2.0136 3.4980 17 9 3.3919 -2.6506 4.6031 18 6 2.1516 -2.6852 2.5852 19 6 1.6936 -2.0333 1.4525 20 9 0.9166 -2.6898 0.5635 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7089 1.1614 -3.4844 25 1 2.5387 1.8976 2.3029 26 1 3.9073 -0.1664 3.9906 27 1 1.8873 -3.7181 2.7573 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260096520.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:59 Heat of formation + Delta-G solvation = -134.403310 kcal Electronic energy + Delta-G solvation = -15797.575343 eV Core-core repulsion = 12769.705605 eV Total energy + Delta-G solvation = -3027.869738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.97611 -49.80135 -40.68008 -37.36409 -36.24893 -33.23796 -30.93135 -29.58906 -27.23392 -24.41712 -23.88224 -21.81784 -19.85014 -18.86395 -18.04390 -17.65546 -17.06924 -16.86012 -16.65311 -16.18951 -15.98612 -15.56234 -15.11612 -14.65288 -14.44001 -13.61608 -13.47273 -13.04371 -12.82454 -12.73599 -12.47152 -12.24912 -12.13832 -11.93500 -11.30587 -11.02989 -10.45949 -9.76857 -9.41842 -8.11323 -6.23273 -0.01643 0.04783 1.38505 1.40678 1.51649 2.31135 2.45545 2.74730 3.17163 3.36147 3.56472 3.88166 3.93295 4.04029 4.65753 4.80798 4.86183 4.94409 5.00127 5.09851 5.21388 5.31046 5.57410 5.77234 5.90899 6.03131 6.30062 6.81710 6.82206 7.43081 8.93450 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.034262 B = 0.008948 C = 0.008246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.024444 B = 3128.407855 C = 3394.881275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.078 3.922 3 H 0.029 0.971 4 C -0.518 4.518 5 H 0.042 0.958 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.949 3.051 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.278 1.278 12 C -0.135 4.135 13 C 0.152 3.848 14 O -0.493 6.493 15 C -0.180 4.180 16 C 0.126 3.874 17 F -0.129 7.129 18 C -0.198 4.198 19 C 0.130 3.870 20 F -0.132 7.132 21 H 0.031 0.969 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.262 0.738 25 H 0.411 0.589 26 H 0.170 0.830 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -2.701 11.603 12.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.060 3.940 3 H 0.047 0.953 4 C -0.556 4.556 5 H 0.060 0.940 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.203 1.203 12 C -0.137 4.137 13 C 0.106 3.894 14 O -0.306 6.306 15 C -0.199 4.199 16 C 0.107 3.893 17 F -0.108 7.108 18 C -0.217 4.217 19 C 0.110 3.890 20 F -0.111 7.111 21 H 0.050 0.950 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.271 0.729 26 H 0.188 0.812 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.294 -2.864 11.188 11.775 hybrid contribution -0.303 -0.312 -0.891 0.992 sum 1.991 -3.176 10.297 10.958 Atomic orbital electron populations 1.21720 0.97277 0.99677 1.00141 1.17588 0.93006 0.95193 0.88257 0.95258 1.21275 1.31023 1.11926 0.91402 0.93997 1.25600 0.95311 0.95714 1.01478 1.69980 1.37497 1.23829 1.23951 0.85631 0.78279 0.78718 0.79832 1.19777 1.20354 1.20327 1.21056 0.98973 0.94347 0.99308 1.17686 0.94063 0.86103 0.91511 1.84781 1.52450 1.12796 1.80542 1.21437 1.05126 0.94142 0.99159 1.16771 0.97534 0.90600 0.84441 1.91510 1.87496 1.81746 1.50004 1.21100 1.03295 1.02893 0.94418 1.17112 0.93682 0.90007 0.88182 1.91476 1.72017 1.80374 1.67203 0.95044 0.91945 0.94936 0.92859 0.72914 0.81216 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.76 71.98 0.63 -5.64 15 2 C 0.08 3.88 2.35 -12.29 -0.03 3.85 15 3 H 0.03 1.56 6.99 -2.39 -0.02 1.54 15 4 C -0.52 -28.96 7.60 25.60 0.19 -28.76 15 5 H 0.04 2.39 7.61 -2.91 -0.02 2.37 15 6 C 0.02 0.99 5.30 84.66 0.45 1.44 15 7 N -0.91 -52.28 11.32 21.45 0.24 -52.04 15 8 Si 0.95 44.46 29.54 68.60 2.03 46.48 15 9 H -0.27 -12.67 7.11 99.48 0.71 -11.97 15 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 12 C -0.14 -5.64 4.75 -19.72 -0.09 -5.73 15 13 C 0.15 5.24 6.68 22.50 0.15 5.39 15 14 O -0.49 -15.93 12.27 -92.41 -1.13 -17.07 15 15 C -0.18 -5.04 9.96 22.41 0.22 -4.82 15 16 C 0.13 3.58 7.30 22.36 0.16 3.74 15 17 F -0.13 -3.34 17.27 44.97 0.78 -2.57 15 18 C -0.20 -6.13 10.00 22.37 0.22 -5.90 15 19 C 0.13 5.07 6.69 22.36 0.15 5.22 15 20 F -0.13 -5.73 14.37 44.97 0.65 -5.09 15 21 H 0.03 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.06 3.33 6.07 -2.39 -0.01 3.31 15 23 H 0.03 1.54 6.29 -2.39 -0.02 1.53 15 24 H 0.26 14.24 8.31 -92.71 -0.77 13.47 15 25 H 0.41 8.98 9.06 -74.06 -0.67 8.31 15 26 H 0.17 3.68 8.06 -2.91 -0.02 3.66 15 27 H 0.17 4.21 8.06 -2.92 -0.02 4.19 15 Total: -1.00 -62.87 244.06 5.16 -57.70 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 0.54 Total: 3.78 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 2.06 Total: -31.21 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.24 Total: -52.04 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -1.13 Total: -17.07 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 1.42 Total: -7.65 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -62.87 5.16 -57.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260096520.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.699 kcal (2) G-P(sol) polarization free energy of solvation -62.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds