Wall clock time and date at job start Mon Mar 30 2020 02:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39901 * 109.47350 * 2 1 4 4 F 1.39896 * 109.46899 * 239.99758 * 2 1 3 5 5 C 1.50699 * 109.47015 * 120.00485 * 2 1 3 6 6 C 1.38328 * 119.96230 * 269.97608 * 5 2 1 7 7 C 1.38280 * 120.13484 * 180.02562 * 6 5 2 8 8 C 1.38120 * 120.07150 * 359.67534 * 7 6 5 9 9 C 1.38861 * 119.92830 * 0.59673 * 8 7 6 10 10 O 1.35751 * 120.06597 * 179.69892 * 9 8 7 11 11 C 1.34829 * 117.00376 * 354.17384 * 10 9 8 12 12 H 1.07998 * 119.99999 * 5.03596 * 11 10 9 13 13 C 1.38657 * 120.00083 * 185.03464 * 11 10 9 14 14 N 1.31555 * 119.99797 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99748 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47410 * 90.00109 * 15 13 11 17 17 H 1.48504 * 109.46801 * 209.99865 * 15 13 11 18 18 H 1.48497 * 109.47495 * 329.99577 * 15 13 11 19 19 C 1.38073 * 119.96947 * 89.99454 * 5 2 1 20 20 H 1.08998 * 109.46620 * 300.00071 * 1 2 3 21 21 H 1.09002 * 109.46558 * 59.99687 * 1 2 3 22 22 H 1.08993 * 109.47173 * 179.97438 * 1 2 3 23 23 H 1.08001 * 119.93314 * 0.02562 * 6 5 2 24 24 H 1.08007 * 119.96121 * 179.97438 * 7 6 5 25 25 H 1.08001 * 120.03709 * 180.32387 * 8 7 6 26 26 H 0.96998 * 119.99749 * 179.97438 * 14 13 11 27 27 H 1.08001 * 120.03594 * 0.02562 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9965 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0324 -0.7105 1.2304 6 6 2.2631 0.0017 2.3936 7 6 2.7245 -0.6466 3.5245 8 6 2.9501 -2.0090 3.4978 9 6 2.7248 -2.7257 2.3300 10 8 2.9514 -4.0639 2.2988 11 6 3.5082 -4.6162 3.3956 12 1 3.6780 -4.0145 4.2762 13 6 3.8628 -5.9566 3.3928 14 7 4.4065 -6.4953 4.4627 15 14 3.5697 -6.9971 1.8693 16 1 4.7648 -6.9352 0.9901 17 1 3.3235 -8.4053 2.2716 18 1 2.3877 -6.4782 1.1353 19 6 2.2622 -2.0715 1.1954 20 1 -0.3632 0.5138 0.8900 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 2.0825 1.0662 2.4186 24 1 2.9041 -0.0877 4.4311 25 1 3.3055 -2.5156 4.3829 26 1 4.6543 -7.4332 4.4609 27 1 2.0825 -2.6269 0.2867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260138554.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:30 Heat of formation + Delta-G solvation = -106.429616 kcal Electronic energy + Delta-G solvation = -15393.082460 eV Core-core repulsion = 12366.425752 eV Total energy + Delta-G solvation = -3026.656708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.070 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.80002 -46.81017 -39.29519 -36.85568 -32.56887 -32.33917 -29.82832 -28.86386 -25.41030 -23.70702 -21.86459 -20.69142 -18.15018 -17.73879 -17.11028 -16.15359 -15.85055 -15.25449 -14.70457 -14.04252 -13.95137 -13.62894 -13.39817 -13.14693 -12.97297 -12.52838 -12.41946 -12.40912 -12.13027 -11.66182 -11.44268 -10.99957 -10.85872 -10.59761 -10.22153 -9.51414 -8.96362 -8.47121 -7.55750 -6.49504 -4.17086 1.72951 2.07837 3.17846 3.22324 3.36124 3.86009 4.17501 4.18927 4.28898 4.59039 4.85387 4.89870 5.04142 5.42183 5.48379 5.64323 5.68793 5.84329 5.92921 6.07163 6.28230 6.56945 6.85032 6.98675 7.12037 7.39490 7.67961 7.92930 8.84980 9.44695 10.57662 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.039706 B = 0.007344 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.008679 B = 3811.923081 C = 4334.076291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.339 3.661 3 F -0.200 7.200 4 F -0.198 7.198 5 C -0.117 4.117 6 C -0.176 4.176 7 C -0.075 4.075 8 C -0.206 4.206 9 C 0.157 3.843 10 O -0.213 6.213 11 C -0.393 4.393 12 H 0.107 0.893 13 C 0.066 3.934 14 N -0.876 5.876 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.259 1.259 19 C -0.160 4.160 20 H 0.089 0.911 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.138 0.862 26 H 0.281 0.719 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 10.346 -5.867 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.303 3.697 3 F -0.181 7.181 4 F -0.179 7.179 5 C -0.118 4.118 6 C -0.195 4.195 7 C -0.093 4.093 8 C -0.225 4.225 9 C 0.105 3.895 10 O -0.117 6.117 11 C -0.468 4.468 12 H 0.125 0.875 13 C -0.138 4.138 14 N -0.513 5.513 15 Si 0.731 3.269 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.183 1.183 19 C -0.179 4.179 20 H 0.108 0.892 21 H 0.097 0.903 22 H 0.109 0.891 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.155 0.845 26 H 0.091 0.909 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.401 9.965 -5.961 13.259 hybrid contribution 0.166 -0.465 -0.464 0.678 sum -6.235 9.500 -6.425 13.053 Atomic orbital electron populations 1.22727 0.91071 1.05673 1.04806 1.19447 0.93366 0.74779 0.82100 1.92983 1.90750 1.37550 1.96786 1.93002 1.90692 1.81012 1.53190 1.19634 1.04006 0.94031 0.94141 1.20401 1.07068 0.99152 0.92888 1.20784 0.97267 0.93964 0.97328 1.21431 1.07196 0.94551 0.99332 1.18931 0.93698 0.84025 0.92853 1.83575 1.70663 1.16436 1.41060 1.20771 1.39509 0.95299 0.91214 0.87522 1.24470 0.95068 0.96080 0.98228 1.69640 1.39282 1.14287 1.28078 0.86180 0.80034 0.78684 0.82041 1.19744 1.20664 1.18293 1.19869 1.07451 0.92783 0.97813 0.89203 0.90295 0.89058 0.86578 0.86451 0.84469 0.90898 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 9.37 37.16 0.35 -1.75 15 2 C 0.34 5.12 2.33 -27.88 -0.06 5.06 15 3 F -0.20 -3.07 16.20 2.25 0.04 -3.03 15 4 F -0.20 -3.25 16.20 2.25 0.04 -3.22 15 5 C -0.12 -2.04 4.99 -104.65 -0.52 -2.56 15 6 C -0.18 -2.93 9.40 -39.53 -0.37 -3.30 15 7 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 15 8 C -0.21 -4.28 9.17 -39.39 -0.36 -4.65 15 9 C 0.16 3.56 6.65 -39.11 -0.26 3.30 15 10 O -0.21 -5.50 8.59 0.05 0.00 -5.50 15 11 C -0.39 -10.82 9.95 30.89 0.31 -10.51 15 12 H 0.11 2.98 5.44 -52.49 -0.29 2.69 15 13 C 0.07 1.80 5.49 -17.52 -0.10 1.71 15 14 N -0.88 -24.82 13.96 55.48 0.77 -24.04 15 15 Si 0.91 21.32 28.62 -169.99 -4.86 16.46 15 16 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 18 H -0.26 -6.11 7.11 56.52 0.40 -5.71 15 19 C -0.16 -3.18 9.34 -39.40 -0.37 -3.55 15 20 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.12 1.66 7.60 -52.49 -0.40 1.27 15 24 H 0.12 1.69 8.06 -52.48 -0.42 1.27 15 25 H 0.14 2.96 5.64 -52.49 -0.30 2.67 15 26 H 0.28 7.34 8.31 -40.82 -0.34 7.01 15 27 H 0.13 2.38 7.60 -52.49 -0.40 1.99 15 LS Contribution 248.68 15.07 3.75 3.75 Total: -1.00 -28.61 248.68 -4.26 -32.87 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -2.21 Total: 0.68 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -1.79 Total: -17.97 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.77 Total: -24.04 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: 0.00 Total: -5.50 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.07 Total: -6.25 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.86 Total: 16.46 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.61 -4.26 -32.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138554.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.556 kcal (2) G-P(sol) polarization free energy of solvation -28.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds