Wall clock time and date at job start Mon Mar 30 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48500 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46924 * 299.99983 * 3 2 1 6 6 H 1.48493 * 109.47020 * 60.00063 * 3 2 1 7 7 C 1.39878 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99678 * 162.70513 * 7 2 1 9 9 C 1.41363 * 120.00189 * 342.69546 * 7 2 1 10 10 C 1.41077 * 120.13089 * 154.82162 * 9 7 2 11 11 C 1.36122 * 120.58778 * 180.02562 * 10 9 7 12 12 C 1.39475 * 120.41503 * 359.97438 * 11 10 9 13 13 O 1.34770 * 133.12980 * 179.97438 * 12 11 10 14 14 C 1.34455 * 110.98154 * 179.76772 * 13 12 11 15 15 C 1.33937 * 110.24155 * 0.39976 * 14 13 12 16 16 C 1.50703 * 126.92159 * 179.88884 * 15 14 13 17 17 C 1.52991 * 117.49674 * 299.68000 * 16 15 14 18 18 C 1.52994 * 60.00181 * 107.49116 * 17 16 15 19 19 C 1.40862 * 119.71423 * 0.02562 * 12 11 10 20 20 C 1.38850 * 120.29591 * 0.02562 * 19 12 11 21 21 H 0.96998 * 120.00109 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.70548 * 0.02562 * 10 9 7 23 23 H 1.07995 * 119.78945 * 180.02562 * 11 10 9 24 24 H 1.07997 * 124.87667 * 180.26429 * 14 13 12 25 25 H 1.08994 * 115.55864 * 153.99133 * 16 15 14 26 26 H 1.09000 * 117.50190 * 0.02562 * 17 16 15 27 27 H 1.09004 * 117.49659 * 214.98011 * 17 16 15 28 28 H 1.09003 * 117.50267 * 107.48309 * 18 17 16 29 29 H 1.09005 * 117.50281 * 252.48607 * 18 17 16 30 30 H 1.08000 * 120.37098 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0082 -1.2114 -0.0005 8 1 3.0516 -1.2324 -0.2786 9 6 1.3494 -2.4081 0.3631 10 6 1.8203 -3.6491 -0.1149 11 6 1.1927 -4.8071 0.2289 12 6 0.0734 -4.7835 1.0607 13 8 -0.7287 -5.7479 1.5535 14 6 -1.6929 -5.2223 2.3294 15 6 -1.5749 -3.8889 2.3757 16 6 -2.4565 -2.9278 3.1308 17 6 -3.9422 -2.8971 2.7670 18 6 -3.4911 -3.5217 4.0888 19 6 -0.4097 -3.5528 1.5466 20 6 0.2230 -2.3662 1.2006 21 1 -0.4850 0.8400 0.0004 22 1 2.6864 -3.6807 -0.7593 23 1 1.5644 -5.7500 -0.1440 24 1 -2.4544 -5.7931 2.8400 25 1 -1.9887 -1.9857 3.4163 26 1 -4.2821 -3.5724 1.9818 27 1 -4.4519 -1.9347 2.8131 28 1 -3.7039 -2.9702 5.0046 29 1 -3.5345 -4.6076 4.1731 30 1 -0.1461 -1.4219 1.5728 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260285637.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:07 Heat of formation + Delta-G solvation = 38.804760 kcal Electronic energy + Delta-G solvation = -14935.308093 eV Core-core repulsion = 12469.178750 eV Total energy + Delta-G solvation = -2466.129343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.16610 -36.93939 -36.60699 -33.39128 -31.27043 -29.32646 -27.98752 -25.26519 -23.02593 -22.12485 -21.66817 -20.62576 -18.53351 -17.42510 -16.38635 -15.66791 -15.06196 -14.88715 -14.78555 -13.72570 -13.64150 -12.76605 -12.68415 -11.95989 -11.71650 -11.39715 -11.32589 -11.12636 -11.11124 -10.83484 -10.61781 -10.34673 -10.16173 -9.84335 -9.43139 -9.11312 -8.60865 -7.31291 -6.94914 -6.74151 -4.32417 2.19851 2.73073 3.07954 3.12759 3.16226 3.36242 3.92032 3.94329 4.30334 4.59043 5.01110 5.19362 5.37800 5.51251 5.60785 5.74749 5.82086 6.04342 6.10297 6.29677 6.35695 6.51008 6.61810 6.82378 6.90905 7.12855 7.23625 7.36261 7.58741 7.78780 7.92291 8.09215 8.26634 8.58807 8.85796 8.89317 10.20733 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.026027 B = 0.008926 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.557625 B = 3136.058750 C = 4075.807058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.462 4.462 8 H 0.079 0.921 9 C 0.092 3.908 10 C -0.171 4.171 11 C -0.091 4.091 12 C -0.059 4.059 13 O -0.209 6.209 14 C -0.021 4.021 15 C -0.157 4.157 16 C -0.066 4.066 17 C -0.174 4.174 18 C -0.185 4.185 19 C -0.090 4.090 20 C -0.137 4.137 21 H 0.279 0.721 22 H 0.108 0.892 23 H 0.100 0.900 24 H 0.184 0.816 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.135 -2.784 4.487 6.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.090 3.910 10 C -0.190 4.190 11 C -0.110 4.110 12 C -0.105 4.105 13 O -0.113 6.113 14 C -0.086 4.086 15 C -0.159 4.159 16 C -0.084 4.084 17 C -0.211 4.211 18 C -0.222 4.222 19 C -0.091 4.091 20 C -0.157 4.157 21 H 0.090 0.910 22 H 0.126 0.874 23 H 0.118 0.882 24 H 0.201 0.799 25 H 0.128 0.872 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.276 -2.891 4.394 6.779 hybrid contribution 0.151 0.924 -0.001 0.936 sum -4.126 -1.967 4.393 6.340 Atomic orbital electron populations 1.69859 1.07479 1.29007 1.35623 1.25874 0.94727 1.01225 0.92443 0.86293 0.80989 0.81120 0.78517 1.18410 1.20048 1.19768 1.19490 0.97885 0.90972 1.40815 0.90276 1.17494 0.91743 0.92064 0.89708 1.20702 1.02274 0.92061 1.03941 1.19120 0.94161 0.98014 0.99704 1.19316 0.98305 0.85543 1.07304 1.83761 1.36338 1.35948 1.55242 1.23114 0.94129 0.93154 0.98224 1.20186 0.98840 0.92976 1.03872 1.20164 0.89002 0.99081 1.00164 1.22993 0.97424 1.02414 0.98303 1.22978 1.04873 1.00296 0.94010 1.19566 0.95498 0.94578 0.99483 1.20696 0.98977 0.95035 1.00956 0.90980 0.87406 0.88220 0.79891 0.87219 0.88942 0.88867 0.88883 0.89164 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.61 10.97 55.54 0.61 -20.00 16 2 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.13 9.05 -37.78 -0.34 -12.47 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.09 2.46 5.57 -106.81 -0.60 1.87 16 10 C -0.17 -4.13 9.70 -39.27 -0.38 -4.51 16 11 C -0.09 -2.12 9.99 -39.88 -0.40 -2.51 16 12 C -0.06 -1.44 7.43 -38.13 -0.28 -1.73 16 13 O -0.21 -4.62 10.57 4.00 0.04 -4.58 16 14 C -0.02 -0.40 11.35 29.22 0.33 -0.07 16 15 C -0.16 -3.30 6.03 -102.62 -0.62 -3.91 16 16 C -0.07 -1.16 6.32 -91.78 -0.58 -1.74 16 17 C -0.17 -2.58 10.23 -26.74 -0.27 -2.85 16 18 C -0.18 -2.49 10.02 -26.74 -0.27 -2.76 16 19 C -0.09 -2.26 6.37 -105.17 -0.67 -2.93 16 20 C -0.14 -3.65 8.74 -38.53 -0.34 -3.98 16 21 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 22 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 23 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 24 H 0.18 2.62 7.11 -52.49 -0.37 2.24 16 25 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 26 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.10 6.97 -51.93 -0.36 0.74 16 30 H 0.12 3.38 6.19 -52.49 -0.33 3.06 16 LS Contribution 263.53 15.07 3.97 3.97 Total: -1.00 -28.57 263.53 -8.06 -36.62 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -3.15 Total: 6.25 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: -4.50 Total: -35.82 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.61 Total: -20.00 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: 0.04 Total: -4.58 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.57 -8.06 -36.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285637.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.427 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds