Wall clock time and date at job start Mon Mar 30 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48500 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46924 * 299.99983 * 3 2 1 6 6 H 1.48493 * 109.47020 * 60.00063 * 3 2 1 7 7 C 1.39878 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99678 * 162.70513 * 7 2 1 9 9 C 1.41363 * 120.00189 * 342.69546 * 7 2 1 10 10 C 1.41077 * 120.13089 * 154.82162 * 9 7 2 11 11 C 1.36122 * 120.58778 * 180.02562 * 10 9 7 12 12 C 1.39475 * 120.41503 * 359.97438 * 11 10 9 13 13 O 1.34770 * 133.12980 * 179.97438 * 12 11 10 14 14 C 1.34455 * 110.98154 * 179.76772 * 13 12 11 15 15 C 1.33937 * 110.24155 * 0.39976 * 14 13 12 16 16 C 1.50703 * 126.92159 * 179.88884 * 15 14 13 17 17 C 1.52991 * 117.49674 * 299.68000 * 16 15 14 18 18 C 1.52994 * 60.00181 * 107.49116 * 17 16 15 19 19 C 1.40862 * 119.71423 * 0.02562 * 12 11 10 20 20 C 1.38850 * 120.29591 * 0.02562 * 19 12 11 21 21 H 0.96998 * 120.00109 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.70548 * 0.02562 * 10 9 7 23 23 H 1.07995 * 119.78945 * 180.02562 * 11 10 9 24 24 H 1.07997 * 124.87667 * 180.26429 * 14 13 12 25 25 H 1.08994 * 115.55864 * 153.99133 * 16 15 14 26 26 H 1.09000 * 117.50190 * 0.02562 * 17 16 15 27 27 H 1.09004 * 117.49659 * 214.98011 * 17 16 15 28 28 H 1.09003 * 117.50267 * 107.48309 * 18 17 16 29 29 H 1.09005 * 117.50281 * 252.48607 * 18 17 16 30 30 H 1.08000 * 120.37098 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0082 -1.2114 -0.0005 8 1 3.0516 -1.2324 -0.2786 9 6 1.3494 -2.4081 0.3631 10 6 1.8203 -3.6491 -0.1149 11 6 1.1927 -4.8071 0.2289 12 6 0.0734 -4.7835 1.0607 13 8 -0.7287 -5.7479 1.5535 14 6 -1.6929 -5.2223 2.3294 15 6 -1.5749 -3.8889 2.3757 16 6 -2.4565 -2.9278 3.1308 17 6 -3.9422 -2.8971 2.7670 18 6 -3.4911 -3.5217 4.0888 19 6 -0.4097 -3.5528 1.5466 20 6 0.2230 -2.3662 1.2006 21 1 -0.4850 0.8400 0.0004 22 1 2.6864 -3.6807 -0.7593 23 1 1.5644 -5.7500 -0.1440 24 1 -2.4544 -5.7931 2.8400 25 1 -1.9887 -1.9857 3.4163 26 1 -4.2821 -3.5724 1.9818 27 1 -4.4519 -1.9347 2.8131 28 1 -3.7039 -2.9702 5.0046 29 1 -3.5345 -4.6076 4.1731 30 1 -0.1461 -1.4219 1.5728 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260285637.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:07 Heat of formation + Delta-G solvation = 24.290247 kcal Electronic energy + Delta-G solvation = -14935.937489 eV Core-core repulsion = 12469.178750 eV Total energy + Delta-G solvation = -2466.758739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.87928 -38.49181 -38.19051 -35.29103 -32.94522 -31.23899 -29.73130 -27.17737 -24.44008 -23.52946 -23.23136 -22.42758 -20.14650 -19.31347 -18.03864 -17.39413 -16.72132 -16.62537 -16.20913 -15.44823 -15.01503 -14.58378 -14.45128 -13.74677 -13.42530 -13.25645 -12.80087 -12.57794 -12.54473 -12.38813 -12.20476 -11.94593 -11.74246 -11.51831 -11.11224 -10.98290 -10.23433 -9.22499 -8.72053 -8.61425 -6.31554 0.47021 0.88301 1.38041 1.47291 1.53693 1.67562 2.20560 2.28572 2.67289 3.08353 3.62936 3.69707 3.91814 4.05215 4.18057 4.29000 4.36733 4.71617 4.75192 4.84351 4.92588 5.00045 5.07033 5.23894 5.26281 5.28082 5.41876 5.56569 5.79385 5.89741 6.02001 6.13299 6.41681 6.67775 6.90261 6.96343 8.34629 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.026027 B = 0.008926 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.557625 B = 3136.058750 C = 4075.807058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.032 3.968 3 Si 0.983 3.017 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.495 4.495 8 H 0.083 0.917 9 C 0.063 3.937 10 C -0.184 4.184 11 C -0.087 4.087 12 C -0.079 4.079 13 O -0.212 6.212 14 C -0.002 4.002 15 C -0.178 4.178 16 C -0.107 4.107 17 C -0.170 4.170 18 C -0.147 4.147 19 C -0.115 4.115 20 C -0.167 4.167 21 H 0.286 0.714 22 H 0.127 0.873 23 H 0.134 0.866 24 H 0.240 0.760 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -3.588 5.343 8.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.183 4.183 3 Si 0.803 3.197 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.524 4.524 8 H 0.101 0.899 9 C 0.061 3.939 10 C -0.203 4.203 11 C -0.106 4.106 12 C -0.124 4.124 13 O -0.115 6.115 14 C -0.067 4.067 15 C -0.179 4.179 16 C -0.125 4.125 17 C -0.207 4.207 18 C -0.183 4.183 19 C -0.116 4.116 20 C -0.187 4.187 21 H 0.097 0.903 22 H 0.145 0.855 23 H 0.151 0.849 24 H 0.255 0.745 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.201 -3.715 5.252 8.272 hybrid contribution 0.348 1.075 -0.233 1.154 sum -4.854 -2.639 5.018 7.464 Atomic orbital electron populations 1.69937 1.09097 1.30314 1.36067 1.26785 0.95471 1.04638 0.91360 0.85152 0.79570 0.76148 0.78804 1.17793 1.19053 1.19197 1.19788 0.98278 0.92010 1.42341 0.89916 1.17903 0.92311 0.93476 0.90225 1.20939 1.03147 0.91730 1.04502 1.19474 0.93443 0.99026 0.98633 1.19606 0.99079 0.85924 1.07818 1.83771 1.36679 1.35453 1.55647 1.24047 0.93394 0.92906 0.96311 1.20548 0.98543 0.94549 1.04307 1.20114 0.90141 0.98583 1.03707 1.23085 0.94656 1.03363 0.99582 1.23138 0.99699 1.01698 0.93789 1.20064 0.97030 0.94375 1.00121 1.20586 1.00363 0.95015 1.02728 0.90336 0.85534 0.84853 0.74454 0.89512 0.88807 0.87836 0.86711 0.86940 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.76 10.97 21.82 0.24 -44.52 16 2 C 0.03 1.63 5.14 85.23 0.44 2.07 16 3 Si 0.98 38.77 29.59 68.60 2.03 40.80 16 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 6 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.49 -26.99 9.05 23.44 0.21 -26.77 16 8 H 0.08 4.27 7.90 -2.91 -0.02 4.24 16 9 C 0.06 3.52 5.57 -21.28 -0.12 3.40 16 10 C -0.18 -9.10 9.70 22.47 0.22 -8.88 16 11 C -0.09 -4.04 9.99 22.08 0.22 -3.82 16 12 C -0.08 -3.83 7.43 23.21 0.17 -3.66 16 13 O -0.21 -9.00 10.57 -8.60 -0.09 -9.09 16 14 C 0.00 -0.08 11.35 66.84 0.76 0.68 16 15 C -0.18 -7.40 6.03 -18.57 -0.11 -7.51 16 16 C -0.11 -3.72 6.32 -11.54 -0.07 -3.80 16 17 C -0.17 -4.68 10.23 30.59 0.31 -4.36 16 18 C -0.15 -3.43 10.02 30.59 0.31 -3.12 16 19 C -0.11 -5.91 6.37 -20.22 -0.13 -6.04 16 20 C -0.17 -9.40 8.74 22.95 0.20 -9.20 16 21 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 22 H 0.13 5.58 8.06 -2.91 -0.02 5.55 16 23 H 0.13 5.11 8.06 -2.91 -0.02 5.09 16 24 H 0.24 5.54 7.11 -2.91 -0.02 5.52 16 25 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 26 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 28 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.11 2.14 6.97 -2.38 -0.02 2.12 16 30 H 0.10 5.99 6.19 -2.91 -0.02 5.97 16 Total: -1.00 -65.03 263.53 5.73 -59.29 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 1.15 Total: 24.53 kcal Atomic # 6 Polarization: -73.42 SS G_CDS: 2.41 Total: -71.01 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.24 Total: -44.52 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.09 Total: -9.09 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -65.03 5.73 -59.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285637.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.582 kcal (2) G-P(sol) polarization free energy of solvation -65.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds