Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47114 * 304.99535 * 10 9 7 12 12 N 1.46901 * 109.47363 * 64.99807 * 10 9 7 13 13 C 1.50700 * 109.47081 * 185.00082 * 10 9 7 14 14 C 1.38538 * 120.78028 * 264.71455 * 13 10 9 15 15 C 1.38516 * 119.16318 * 179.77888 * 14 13 10 16 16 F 1.35096 * 119.62015 * 180.27416 * 15 14 13 17 17 N 1.32044 * 120.75366 * 0.50945 * 15 14 13 18 18 C 1.31909 * 121.71296 * 359.74539 * 17 15 14 19 19 C 1.38363 * 120.76259 * 359.97438 * 18 17 15 20 20 F 1.35100 * 120.41268 * 179.97438 * 19 18 17 21 21 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 23 23 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 24 24 H 1.00904 * 110.99895 * 59.99892 * 12 10 9 25 25 H 1.00898 * 111.00294 * 183.95256 * 12 10 9 26 26 H 1.07994 * 120.42051 * 0.02562 * 14 13 10 27 27 H 1.07999 * 119.61427 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 1 2.9329 -3.5576 -0.8256 12 7 3.0024 -3.6507 1.2720 13 6 1.4961 -4.9640 -0.1104 14 6 1.1546 -5.6954 1.0155 15 6 0.4621 -6.8853 0.8631 16 9 0.1196 -7.6031 1.9552 17 7 0.1370 -7.3283 -0.3375 18 6 0.4503 -6.6607 -1.4312 19 6 1.1366 -5.4616 -1.3563 20 9 1.4544 -4.7841 -2.4811 21 1 -0.4851 -0.8400 -0.0004 22 1 0.6205 -2.5547 0.8933 23 1 0.6280 -2.5591 -0.8867 24 1 2.3865 -3.7464 2.0656 25 1 3.7100 -4.3700 1.2748 26 1 1.4215 -5.3403 1.9999 27 1 0.1678 -7.0547 -2.3963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260341267.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -59.489674 kcal Electronic energy + Delta-G solvation = -15420.460627 eV Core-core repulsion = 12428.132139 eV Total energy + Delta-G solvation = -2992.328488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.11718 -48.89493 -40.14480 -36.39885 -33.02595 -31.26828 -30.59210 -28.28631 -25.21075 -23.54389 -22.80058 -20.59130 -18.04218 -17.77460 -17.57344 -16.83476 -16.27665 -15.43354 -15.37807 -14.67679 -14.53307 -14.31709 -13.70994 -13.41548 -13.36595 -12.88760 -12.57044 -11.94917 -11.72231 -11.06194 -10.53855 -10.51991 -10.07978 -9.97257 -9.51576 -8.88381 -8.65442 -8.35375 -8.29387 -6.33625 -4.01451 0.64058 0.85891 3.28506 3.38592 3.47133 3.49285 3.67776 3.93778 4.31952 4.52514 4.59348 4.65586 4.96642 5.16186 5.43854 5.50447 5.61382 5.72638 5.95612 6.33593 6.48322 7.05447 7.21585 7.33899 7.57771 7.81679 8.17853 8.52797 8.88974 9.67826 11.06318 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.037881 B = 0.007050 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.987298 B = 3970.715299 C = 4234.190763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 1.071 2.929 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.578 4.578 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.139 3.861 11 H 0.095 0.905 12 N -0.815 5.815 13 C -0.065 4.065 14 C -0.174 4.174 15 C 0.297 3.703 16 F -0.111 7.111 17 N -0.498 5.498 18 C 0.109 3.891 19 C 0.045 3.955 20 F -0.117 7.117 21 H 0.265 0.735 22 H 0.010 0.990 23 H 0.013 0.987 24 H 0.337 0.663 25 H 0.328 0.672 26 H 0.153 0.847 27 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 -12.520 -0.204 12.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.192 4.192 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.617 4.617 8 H 0.077 0.923 9 C -0.011 4.011 10 C 0.027 3.973 11 H 0.113 0.887 12 N -0.342 5.342 13 C -0.076 4.076 14 C -0.195 4.195 15 C 0.144 3.856 16 F -0.090 7.090 17 N -0.212 5.212 18 C -0.049 4.049 19 C 0.023 3.977 20 F -0.095 7.095 21 H 0.075 0.925 22 H 0.028 0.972 23 H 0.032 0.968 24 H 0.151 0.849 25 H 0.140 0.860 26 H 0.170 0.830 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.542 -10.892 -0.441 11.193 hybrid contribution 0.101 -2.068 0.251 2.086 sum 2.643 -12.960 -0.190 13.228 Atomic orbital electron populations 1.70806 1.06938 1.30289 1.47337 1.25854 0.96490 1.02769 0.94050 0.83503 0.74783 0.75212 0.76520 1.21518 1.21014 1.21423 1.21861 0.94707 0.90630 1.54460 0.92336 1.19269 0.93302 0.92214 0.96357 1.20801 0.94995 0.88039 0.93489 0.88666 1.58725 1.17587 1.54502 1.03428 1.22121 0.95874 0.98821 0.90808 1.21576 1.02268 0.94651 1.01047 1.18049 0.95968 0.88884 0.82699 1.91621 1.90169 1.77721 1.49486 1.67012 1.21811 1.34813 0.97576 1.22565 0.94971 0.90437 0.96952 1.18603 1.02315 0.93470 0.83349 1.91565 1.90578 1.79022 1.48347 0.92460 0.97218 0.96847 0.84853 0.86042 0.82992 0.80567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.90 13.65 55.43 0.76 -27.14 15 2 C 0.01 0.32 5.46 -17.82 -0.10 0.22 15 3 Si 1.07 25.33 29.90 -169.99 -5.08 20.25 15 4 H -0.29 -6.52 7.11 56.52 0.40 -6.11 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.29 -6.53 7.11 56.52 0.40 -6.12 15 7 C -0.58 -15.97 8.84 -34.44 -0.30 -16.27 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 9 C 0.03 0.63 3.92 -27.88 -0.11 0.52 15 10 C 0.14 2.64 2.76 -68.86 -0.19 2.45 15 11 H 0.10 1.89 7.87 -51.93 -0.41 1.48 15 12 N -0.81 -13.76 8.56 -5.65 -0.05 -13.81 15 13 C -0.07 -1.06 5.08 -104.27 -0.53 -1.59 15 14 C -0.17 -2.50 9.31 -39.37 -0.37 -2.87 15 15 C 0.30 4.36 8.41 -17.36 -0.15 4.22 15 16 F -0.11 -1.57 17.29 2.25 0.04 -1.53 15 17 N -0.50 -7.37 10.37 -13.54 -0.14 -7.51 15 18 C 0.11 1.46 11.17 -17.47 -0.20 1.26 15 19 C 0.05 0.70 7.29 -39.29 -0.29 0.41 15 20 F -0.12 -1.93 16.70 2.25 0.04 -1.89 15 21 H 0.27 8.04 7.22 -40.82 -0.29 7.75 15 22 H 0.01 0.25 8.00 -51.93 -0.42 -0.17 15 23 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 15 24 H 0.34 5.31 7.30 -39.29 -0.29 5.03 15 25 H 0.33 4.49 9.06 -39.29 -0.36 4.14 15 26 H 0.15 1.90 6.42 -52.49 -0.34 1.56 15 27 H 0.18 1.75 8.06 -52.49 -0.42 1.33 15 LS Contribution 249.72 15.07 3.76 3.76 Total: -1.00 -30.81 249.72 -5.04 -35.85 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -2.14 Total: 3.66 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -2.22 Total: -11.64 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.57 Total: -48.46 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.42 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.81 -5.04 -35.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341267.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.639 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds