Wall clock time and date at job start Mon Mar 30 2020 03:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47114 * 304.99535 * 10 9 7 12 12 N 1.46901 * 109.47363 * 64.99807 * 10 9 7 13 13 C 1.50700 * 109.47081 * 185.00082 * 10 9 7 14 14 C 1.38538 * 120.78028 * 264.71455 * 13 10 9 15 15 C 1.38516 * 119.16318 * 179.77888 * 14 13 10 16 16 F 1.35096 * 119.62015 * 180.27416 * 15 14 13 17 17 N 1.32044 * 120.75366 * 0.50945 * 15 14 13 18 18 C 1.31909 * 121.71296 * 359.74539 * 17 15 14 19 19 C 1.38363 * 120.76259 * 359.97438 * 18 17 15 20 20 F 1.35100 * 120.41268 * 179.97438 * 19 18 17 21 21 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 23 23 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 24 24 H 1.00904 * 110.99895 * 59.99892 * 12 10 9 25 25 H 1.00898 * 111.00294 * 183.95256 * 12 10 9 26 26 H 1.07994 * 120.42051 * 0.02562 * 14 13 10 27 27 H 1.07999 * 119.61427 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 1 2.9329 -3.5576 -0.8256 12 7 3.0024 -3.6507 1.2720 13 6 1.4961 -4.9640 -0.1104 14 6 1.1546 -5.6954 1.0155 15 6 0.4621 -6.8853 0.8631 16 9 0.1196 -7.6031 1.9552 17 7 0.1370 -7.3283 -0.3375 18 6 0.4503 -6.6607 -1.4312 19 6 1.1366 -5.4616 -1.3563 20 9 1.4544 -4.7841 -2.4811 21 1 -0.4851 -0.8400 -0.0004 22 1 0.6205 -2.5547 0.8933 23 1 0.6280 -2.5591 -0.8867 24 1 2.3865 -3.7464 2.0656 25 1 3.7100 -4.3700 1.2748 26 1 1.4215 -5.3403 1.9999 27 1 0.1678 -7.0547 -2.3963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260341267.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:44 Heat of formation + Delta-G solvation = -81.130593 kcal Electronic energy + Delta-G solvation = -15421.399048 eV Core-core repulsion = 12428.132139 eV Total energy + Delta-G solvation = -2993.266909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.25789 -50.15070 -41.34595 -37.89904 -35.04117 -32.60031 -31.76909 -30.08274 -26.80231 -24.93994 -24.43045 -22.12635 -19.29340 -19.13567 -18.78300 -18.69414 -17.49283 -16.86046 -16.65221 -15.89965 -15.78654 -15.70088 -15.57576 -15.06012 -14.61287 -14.09415 -13.85832 -13.77684 -13.56645 -12.87455 -12.37408 -12.26631 -11.90895 -11.15334 -11.03140 -10.62515 -10.51092 -10.04176 -9.72543 -8.61001 -6.28916 -0.51485 -0.35204 1.56449 1.64659 1.83475 2.12058 2.25012 2.61061 2.76543 3.10118 3.21270 3.38717 3.47582 3.66274 4.01225 4.21490 4.32374 4.46812 4.54449 4.72263 5.06182 5.27971 5.33205 5.99652 6.18691 6.20599 6.28348 6.58057 6.67031 7.48960 8.79614 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.037881 B = 0.007050 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.987298 B = 3970.715299 C = 4234.190763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.043 4.043 3 Si 1.117 2.883 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.584 4.584 8 H 0.057 0.943 9 C 0.030 3.970 10 C 0.154 3.846 11 H 0.084 0.916 12 N -0.822 5.822 13 C -0.079 4.079 14 C -0.165 4.165 15 C 0.295 3.705 16 F -0.107 7.107 17 N -0.505 5.505 18 C 0.125 3.875 19 C 0.033 3.967 20 F -0.126 7.126 21 H 0.252 0.748 22 H -0.007 1.007 23 H -0.011 1.011 24 H 0.344 0.656 25 H 0.349 0.651 26 H 0.170 0.830 27 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 -13.303 -0.059 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.239 4.239 3 Si 0.939 3.061 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.622 4.622 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.042 3.958 11 H 0.102 0.898 12 N -0.353 5.353 13 C -0.090 4.090 14 C -0.186 4.186 15 C 0.143 3.857 16 F -0.086 7.086 17 N -0.220 5.220 18 C -0.033 4.033 19 C 0.010 3.990 20 F -0.105 7.105 21 H 0.061 0.939 22 H 0.011 0.989 23 H 0.007 0.993 24 H 0.159 0.841 25 H 0.163 0.837 26 H 0.187 0.813 27 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.415 -11.715 -0.286 12.206 hybrid contribution -0.177 -1.915 0.209 1.935 sum 3.239 -13.630 -0.077 14.010 Atomic orbital electron populations 1.70940 1.08023 1.29510 1.49878 1.27311 0.96535 1.06718 0.93357 0.82919 0.74008 0.71262 0.77897 1.19612 1.21429 1.19567 1.22225 0.94825 0.92078 1.53070 0.92519 1.19094 0.93767 0.93639 0.94271 1.20234 0.93824 0.87591 0.94198 0.89771 1.58591 1.18074 1.55892 1.02727 1.21821 0.96930 0.98234 0.91989 1.21637 1.01514 0.94219 1.01218 1.18115 0.95850 0.88901 0.82874 1.91632 1.90079 1.77580 1.49349 1.67110 1.21907 1.35047 0.97889 1.23058 0.93121 0.89120 0.97971 1.18832 1.03000 0.94311 0.82816 1.91540 1.90777 1.79399 1.48768 0.93905 0.98855 0.99287 0.84077 0.83686 0.81282 0.76945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.50 13.65 21.45 0.29 -58.21 15 2 C -0.04 -2.47 5.46 84.66 0.46 -2.01 15 3 Si 1.12 50.52 29.90 68.60 2.05 52.57 15 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 15 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.58 -32.41 8.84 25.60 0.23 -32.18 15 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 15 9 C 0.03 1.47 3.92 29.85 0.12 1.59 15 10 C 0.15 5.81 2.76 44.17 0.12 5.93 15 11 H 0.08 3.33 7.87 -2.39 -0.02 3.31 15 12 N -0.82 -26.73 8.56 -171.80 -1.47 -28.21 15 13 C -0.08 -2.48 5.08 -19.64 -0.10 -2.58 15 14 C -0.16 -4.46 9.31 22.41 0.21 -4.25 15 15 C 0.30 8.07 8.41 84.73 0.71 8.79 15 16 F -0.11 -2.83 17.29 44.97 0.78 -2.05 15 17 N -0.51 -13.79 10.37 -196.76 -2.04 -15.83 15 18 C 0.13 3.07 11.17 84.71 0.95 4.02 15 19 C 0.03 0.98 7.29 22.46 0.16 1.14 15 20 F -0.13 -4.11 16.70 44.97 0.75 -3.36 15 21 H 0.25 15.77 7.22 -92.71 -0.67 15.10 15 22 H -0.01 -0.36 8.00 -2.39 -0.02 -0.38 15 23 H -0.01 -0.60 8.01 -2.39 -0.02 -0.62 15 24 H 0.34 10.38 7.30 -89.69 -0.65 9.72 15 25 H 0.35 8.89 9.06 -89.70 -0.81 8.08 15 26 H 0.17 3.89 6.42 -2.91 -0.02 3.88 15 27 H 0.21 3.52 8.06 -2.91 -0.02 3.50 15 Total: -1.00 -65.86 249.72 3.08 -62.77 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -0.14 Total: 11.87 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 2.86 Total: -19.56 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -3.22 Total: -102.25 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 1.53 Total: -5.41 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.05 Total: 52.57 kcal Total: -65.86 3.08 -62.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260341267.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.356 kcal (2) G-P(sol) polarization free energy of solvation -65.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds