Wall clock time and date at job start Mon Mar 30 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46981 * 2 1 4 4 N 1.46501 * 109.46995 * 179.97438 * 3 2 1 5 5 N 1.40076 * 126.03286 * 90.02999 * 4 3 2 6 6 C 1.30831 * 108.24039 * 180.02562 * 5 4 3 7 7 C 1.39864 * 108.21610 * 359.97438 * 6 5 4 8 8 C 1.50703 * 126.04921 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47064 * 265.02556 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.34982 * 126.03660 * 270.29681 * 4 3 2 18 18 Cl 1.73598 * 126.14418 * 0.02562 * 17 4 3 19 19 H 1.08995 * 109.46455 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47054 * 299.99485 * 1 2 3 21 21 H 1.08998 * 109.46885 * 59.99839 * 1 2 3 22 22 H 1.09004 * 109.46978 * 240.00486 * 2 1 3 23 23 H 1.08995 * 109.47058 * 120.00649 * 2 1 3 24 24 H 1.09005 * 109.46374 * 60.00246 * 3 2 1 25 25 H 1.08992 * 109.47331 * 300.00525 * 3 2 1 26 26 H 1.07996 * 125.89416 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.47152 * 145.02649 * 8 7 6 28 28 H 1.09001 * 109.46980 * 25.02749 * 8 7 6 29 29 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4426 0.0006 5 7 4.3295 1.4430 -1.1318 6 6 5.5751 1.4423 -0.7315 7 6 5.5848 1.4420 0.6671 8 6 6.8094 1.4406 1.5454 9 6 7.1445 0.0248 1.9380 10 1 6.5322 -0.7924 1.5863 11 6 8.2334 -0.2275 2.7454 12 7 8.9793 0.7676 3.1732 13 14 8.6491 -1.9825 3.2314 14 1 8.9145 -2.7847 2.0102 15 1 9.8557 -1.9839 4.0970 16 1 7.5072 -2.5743 3.9739 17 6 4.2987 1.4371 1.0925 18 17 3.7668 1.4281 2.7449 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 1.6767 1.9563 0.8901 25 1 1.6767 1.9564 -0.8899 26 1 6.4456 1.4428 -1.3707 27 1 6.6145 2.0297 2.4416 28 1 7.6478 1.8747 1.0006 29 1 9.7451 0.5902 3.7415 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260342978.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:26 Heat of formation + Delta-G solvation = 51.953530 kcal Electronic energy + Delta-G solvation = -13518.275366 eV Core-core repulsion = 11082.576098 eV Total energy + Delta-G solvation = -2435.699268 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.072 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.63648 -36.15469 -35.38587 -33.23758 -31.31089 -30.27868 -27.29585 -25.58109 -22.82001 -21.95760 -20.28957 -19.60796 -16.69270 -16.21553 -15.17335 -14.81515 -14.44367 -14.23833 -13.28050 -13.02774 -12.67858 -12.23239 -12.14243 -11.89071 -11.53268 -11.30317 -11.23266 -11.00638 -10.83307 -10.61061 -10.57557 -10.03422 -9.56003 -9.37886 -8.73139 -8.32278 -7.51646 -5.94082 -3.96311 2.12180 2.26865 3.17206 3.37393 3.40176 3.41744 3.50599 4.52506 4.67262 4.81604 5.08385 5.16551 5.38763 5.40445 5.55349 5.58713 5.85959 5.93312 6.12701 6.17597 6.22654 6.69275 7.21570 7.32481 7.66108 7.76824 8.01697 8.17451 8.44380 9.07255 9.66343 11.15593 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.032237 B = 0.007577 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.346320 B = 3694.554853 C = 3860.564308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.135 3.865 4 N -0.379 5.379 5 N -0.293 5.293 6 C 0.052 3.948 7 C -0.156 4.156 8 C 0.083 3.917 9 C -0.502 4.502 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.896 5.896 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.102 3.898 18 Cl -0.015 7.015 19 H 0.059 0.941 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.185 0.815 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 1.164 -4.433 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.014 3.986 4 N -0.167 5.167 5 N -0.115 5.115 6 C -0.133 4.133 7 C -0.167 4.167 8 C 0.046 3.954 9 C -0.541 4.541 10 H 0.071 0.929 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.718 3.282 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.048 4.048 18 Cl 0.013 6.987 19 H 0.079 0.921 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.202 0.798 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.498 1.217 -5.159 15.436 hybrid contribution 0.730 -1.060 1.200 1.760 sum -13.767 0.157 -3.959 14.326 Atomic orbital electron populations 1.21683 0.94624 1.02227 1.01945 1.21949 0.96282 0.96272 1.03627 1.21638 0.74970 0.98153 1.03867 1.48508 1.05720 1.59913 1.02541 1.77297 1.02009 1.25805 1.06405 1.23723 0.94703 1.00005 0.94862 1.20692 0.94487 1.07219 0.94310 1.17739 0.87465 0.97487 0.92754 1.21019 1.11157 0.92093 1.29827 0.92898 1.24958 0.96282 0.96830 0.96136 1.69940 1.17567 1.30710 1.35314 0.86682 0.77691 0.85301 0.78492 1.20284 1.21343 1.20325 1.21316 0.91212 1.10125 0.82167 1.98351 1.90399 1.97170 1.12786 0.92149 0.92424 0.92468 0.91000 0.91128 0.89457 0.89024 0.79778 0.95159 0.95205 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 15 2 C -0.14 -1.71 6.26 -26.73 -0.17 -1.88 15 3 C 0.14 1.78 6.28 -4.04 -0.03 1.76 15 4 N -0.38 -6.79 3.61 -58.15 -0.21 -7.00 15 5 N -0.29 -5.59 12.57 30.62 0.38 -5.20 15 6 C 0.05 1.03 11.96 -17.37 -0.21 0.83 15 7 C -0.16 -3.46 5.29 -105.00 -0.56 -4.02 15 8 C 0.08 2.15 5.25 -29.03 -0.15 2.00 15 9 C -0.50 -14.05 9.09 -34.44 -0.31 -14.37 15 10 H 0.05 1.49 7.74 -52.49 -0.41 1.08 15 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 12 N -0.90 -26.46 13.29 55.43 0.74 -25.73 15 13 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 15 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 17 C 0.10 2.05 7.45 -17.16 -0.13 1.92 15 18 Cl -0.01 -0.28 28.47 -51.86 -1.48 -1.75 15 19 H 0.06 0.50 8.14 -51.93 -0.42 0.07 15 20 H 0.06 0.46 8.14 -51.93 -0.42 0.04 15 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 15 22 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.09 1.03 7.81 -51.93 -0.41 0.63 15 25 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.19 3.16 8.06 -52.49 -0.42 2.74 15 27 H 0.03 0.82 8.07 -51.93 -0.42 0.41 15 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 272.74 15.07 4.11 4.11 Total: -1.00 -30.56 272.74 -6.50 -37.07 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: -3.75 Total: -5.10 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.28 Total: -13.11 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.91 Total: -37.93 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.48 Total: -1.75 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.56 -6.50 -37.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260342978.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.019 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds