Wall clock time and date at job start Mon Mar 30 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46981 * 2 1 4 4 N 1.46501 * 109.46995 * 179.97438 * 3 2 1 5 5 N 1.40076 * 126.03286 * 90.02999 * 4 3 2 6 6 C 1.30831 * 108.24039 * 180.02562 * 5 4 3 7 7 C 1.39864 * 108.21610 * 359.97438 * 6 5 4 8 8 C 1.50703 * 126.04921 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47064 * 265.02556 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.34982 * 126.03660 * 270.29681 * 4 3 2 18 18 Cl 1.73598 * 126.14418 * 0.02562 * 17 4 3 19 19 H 1.08995 * 109.46455 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47054 * 299.99485 * 1 2 3 21 21 H 1.08998 * 109.46885 * 59.99839 * 1 2 3 22 22 H 1.09004 * 109.46978 * 240.00486 * 2 1 3 23 23 H 1.08995 * 109.47058 * 120.00649 * 2 1 3 24 24 H 1.09005 * 109.46374 * 60.00246 * 3 2 1 25 25 H 1.08992 * 109.47331 * 300.00525 * 3 2 1 26 26 H 1.07996 * 125.89416 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.47152 * 145.02649 * 8 7 6 28 28 H 1.09001 * 109.46980 * 25.02749 * 8 7 6 29 29 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4426 0.0006 5 7 4.3295 1.4430 -1.1318 6 6 5.5751 1.4423 -0.7315 7 6 5.5848 1.4420 0.6671 8 6 6.8094 1.4406 1.5454 9 6 7.1445 0.0248 1.9380 10 1 6.5322 -0.7924 1.5863 11 6 8.2334 -0.2275 2.7454 12 7 8.9793 0.7676 3.1732 13 14 8.6491 -1.9825 3.2314 14 1 8.9145 -2.7847 2.0102 15 1 9.8557 -1.9839 4.0970 16 1 7.5072 -2.5743 3.9739 17 6 4.2987 1.4371 1.0925 18 17 3.7668 1.4281 2.7449 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 1.6767 1.9563 0.8901 25 1 1.6767 1.9564 -0.8899 26 1 6.4456 1.4428 -1.3707 27 1 6.6145 2.0297 2.4416 28 1 7.6478 1.8747 1.0006 29 1 9.7451 0.5902 3.7415 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260342978.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:26 Heat of formation + Delta-G solvation = 34.305744 kcal Electronic energy + Delta-G solvation = -13519.040631 eV Core-core repulsion = 11082.576098 eV Total energy + Delta-G solvation = -2436.464533 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.16193 -37.69515 -36.54811 -35.22562 -32.81166 -31.92093 -28.93132 -27.01041 -24.72198 -23.06256 -21.65194 -21.25058 -18.42989 -18.07851 -16.53060 -16.27203 -16.07132 -15.62603 -14.64298 -14.46422 -14.24812 -13.98691 -13.28112 -13.21286 -12.98980 -12.89931 -12.76407 -12.51591 -12.36259 -12.27389 -11.84664 -11.69729 -11.49466 -11.37665 -10.49849 -10.18491 -9.19452 -8.09396 -6.20235 0.58090 0.72539 1.43221 1.45273 1.52838 1.81732 1.83000 2.48324 3.20992 3.51917 3.86264 4.01157 4.21757 4.36990 4.47547 4.55441 4.65074 4.80330 4.99676 5.08913 5.12787 5.32882 5.44096 5.64747 5.70972 5.84142 5.90466 6.30797 6.61558 6.89862 7.46535 8.99040 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.032237 B = 0.007577 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.346320 B = 3694.554853 C = 3860.564308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C 0.123 3.877 4 N -0.369 5.369 5 N -0.292 5.292 6 C 0.049 3.951 7 C -0.194 4.194 8 C 0.097 3.903 9 C -0.513 4.513 10 H 0.047 0.953 11 C 0.009 3.991 12 N -0.929 5.929 13 Si 0.954 3.046 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.105 3.895 18 Cl -0.003 7.003 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.104 0.896 25 H 0.113 0.887 26 H 0.204 0.796 27 H 0.006 0.994 28 H 0.010 0.990 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.290 0.379 -4.808 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.176 4.176 3 C 0.004 3.996 4 N -0.156 5.156 5 N -0.115 5.115 6 C -0.135 4.135 7 C -0.206 4.206 8 C 0.059 3.941 9 C -0.552 4.552 10 H 0.065 0.935 11 C -0.189 4.189 12 N -0.569 5.569 13 Si 0.779 3.221 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.047 4.047 18 Cl 0.025 6.975 19 H 0.085 0.915 20 H 0.086 0.914 21 H 0.090 0.910 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.122 0.878 25 H 0.132 0.868 26 H 0.220 0.780 27 H 0.025 0.975 28 H 0.028 0.972 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.137 0.431 -5.554 17.071 hybrid contribution 1.132 -0.773 1.319 1.902 sum -15.005 -0.342 -4.235 15.595 Atomic orbital electron populations 1.21653 0.91795 1.03139 1.03197 1.21896 0.98613 0.94897 1.02161 1.22142 0.72150 0.99543 1.05803 1.48891 1.07244 1.57982 1.01443 1.77265 1.01733 1.25664 1.06836 1.23949 0.95690 0.99817 0.94072 1.20438 0.94164 1.10842 0.95178 1.17388 0.88585 0.95989 0.92162 1.21269 1.11160 0.92931 1.29803 0.93498 1.25764 0.96159 1.00897 0.96093 1.70056 1.18072 1.32829 1.35975 0.85671 0.77626 0.80387 0.78395 1.19468 1.20733 1.19701 1.21346 0.91240 1.08837 0.83266 1.98351 1.90166 1.97051 1.11905 0.91463 0.91371 0.91029 0.92211 0.92870 0.87791 0.86835 0.77971 0.97540 0.97167 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 71.98 0.71 -1.32 15 2 C -0.14 -3.01 6.26 30.60 0.19 -2.82 15 3 C 0.12 2.94 6.28 86.38 0.54 3.48 15 4 N -0.37 -12.65 3.61 -337.88 -1.22 -13.87 15 5 N -0.29 -10.78 12.57 -57.03 -0.72 -11.50 15 6 C 0.05 1.93 11.96 85.24 1.02 2.95 15 7 C -0.19 -8.71 5.29 -20.11 -0.11 -8.82 15 8 C 0.10 5.13 5.25 29.10 0.15 5.29 15 9 C -0.51 -29.05 9.09 25.60 0.23 -28.82 15 10 H 0.05 2.65 7.74 -2.91 -0.02 2.63 15 11 C 0.01 0.50 5.46 84.66 0.46 0.96 15 12 N -0.93 -55.57 13.29 21.45 0.28 -55.29 15 13 Si 0.95 44.44 29.54 68.60 2.03 46.47 15 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 17 C 0.11 4.18 7.45 83.57 0.62 4.80 15 18 Cl 0.00 -0.10 28.47 -2.72 -0.08 -0.17 15 19 H 0.07 0.91 8.14 -2.39 -0.02 0.89 15 20 H 0.07 0.87 8.14 -2.39 -0.02 0.85 15 21 H 0.07 0.86 8.14 -2.39 -0.02 0.84 15 22 H 0.06 1.45 8.14 -2.39 -0.02 1.44 15 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 15 24 H 0.10 2.17 7.81 -2.38 -0.02 2.15 15 25 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 26 H 0.20 6.87 8.06 -2.91 -0.02 6.85 15 27 H 0.01 0.36 8.07 -2.39 -0.02 0.34 15 28 H 0.01 0.56 8.14 -2.39 -0.02 0.54 15 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 15 Total: -1.00 -64.86 272.74 5.26 -59.60 By element: Atomic # 1 Polarization: -2.07 SS G_CDS: 1.13 Total: -0.94 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 3.83 Total: -24.30 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.65 Total: -80.65 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.17 kcal Total: -64.86 5.26 -59.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260342978.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.904 kcal (2) G-P(sol) polarization free energy of solvation -64.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds