Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48502 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47329 * 300.00230 * 3 2 1 6 6 H 1.48501 * 109.47148 * 60.00478 * 3 2 1 7 7 C 1.39910 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00081 * 198.06037 * 7 2 1 9 9 C 1.41017 * 119.99913 * 18.05747 * 7 2 1 10 10 C 1.41215 * 119.92517 * 204.94234 * 9 7 2 11 11 C 1.35881 * 120.17569 * 180.29461 * 10 9 7 12 12 C 1.40154 * 120.03956 * 359.46507 * 11 10 9 13 13 C 1.41043 * 120.51603 * 0.53566 * 12 11 10 14 14 C 1.38071 * 119.48750 * 359.73595 * 13 12 11 15 15 O 1.34961 * 107.27206 * 179.70168 * 13 12 11 16 16 C 1.34325 * 110.82546 * 0.02562 * 15 13 12 17 17 C 1.34558 * 110.16770 * 359.97438 * 16 15 13 18 18 C 1.50696 * 126.87152 * 180.02562 * 17 16 15 19 19 C 1.52995 * 117.50293 * 8.58992 * 18 17 16 20 20 C 1.52999 * 60.00301 * 252.51297 * 19 18 17 21 21 H 0.97001 * 119.99897 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.91138 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.97831 * 179.70176 * 11 10 9 24 24 H 1.07997 * 120.18897 * 180.02562 * 14 13 12 25 25 H 1.08001 * 124.91080 * 179.97438 * 16 15 13 26 26 H 1.08996 * 115.55090 * 154.30629 * 18 17 16 27 27 H 1.09002 * 117.49451 * 0.02562 * 19 18 17 28 28 H 1.09003 * 117.50418 * 145.01856 * 19 18 17 29 29 H 1.08992 * 117.49845 * 252.50521 * 20 19 18 30 30 H 1.09000 * 117.49499 * 107.48246 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3463 -0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8840 2.3964 1.2126 7 6 2.0082 -1.2117 -0.0005 8 1 3.0483 -1.2349 0.2894 9 6 1.3552 -2.4026 -0.3796 10 6 1.8277 -3.6465 0.0934 11 6 1.2060 -4.7976 -0.2735 12 6 0.0857 -4.7527 -1.1145 13 6 -0.3994 -3.5190 -1.5959 14 6 0.2350 -2.3491 -1.2282 15 8 -1.4677 -3.7855 -2.3764 16 6 -1.7028 -5.1070 -2.4290 17 6 -0.7981 -5.7692 -1.6850 18 6 -0.7123 -7.2597 -1.4806 19 6 -1.6210 -8.1438 -2.3372 20 6 -1.9187 -7.9566 -0.8482 21 1 -0.4850 0.8401 0.0004 22 1 2.6882 -3.6831 0.7450 23 1 1.5731 -5.7475 0.0863 24 1 -0.1271 -1.3981 -1.5899 25 1 -2.5023 -5.5707 -2.9877 26 1 0.2773 -7.6443 -1.2341 27 1 -2.2805 -7.6472 -3.0489 28 1 -1.2292 -9.1101 -2.6546 29 1 -1.7228 -8.7999 -0.1859 30 1 -2.7744 -7.3369 -0.5801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260495172.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = 36.146307 kcal Electronic energy + Delta-G solvation = -14790.651812 eV Core-core repulsion = 12324.407190 eV Total energy + Delta-G solvation = -2466.244622 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09380 -37.01880 -36.60955 -33.60477 -30.96283 -28.98976 -28.65301 -25.07073 -23.05603 -22.20618 -21.73994 -20.67407 -18.53209 -17.25549 -16.44218 -15.73382 -15.05253 -14.86302 -14.75144 -13.81794 -13.68808 -12.89585 -12.55809 -12.28208 -11.61028 -11.41720 -11.21002 -11.16013 -11.09975 -10.87810 -10.68219 -10.39262 -10.14179 -10.03222 -9.49026 -9.20926 -8.46053 -7.34777 -6.95222 -6.84927 -4.42833 2.24830 2.80047 3.03561 3.08296 3.09874 3.40379 3.86347 4.04137 4.22957 4.55153 4.94517 5.10323 5.27763 5.55794 5.58177 5.69728 5.75024 5.96638 6.12819 6.20919 6.26796 6.55431 6.62665 6.80579 6.94361 7.05525 7.25672 7.45513 7.65258 7.83278 7.89247 7.98690 8.25141 8.59504 8.75764 8.82979 10.07689 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.057640 B = 0.006391 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.656756 B = 4380.381611 C = 4707.214222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.451 4.451 8 H 0.084 0.916 9 C 0.130 3.870 10 C -0.206 4.206 11 C -0.055 4.055 12 C -0.236 4.236 13 C 0.089 3.911 14 C -0.191 4.191 15 O -0.211 6.211 16 C -0.061 4.061 17 C -0.126 4.126 18 C -0.070 4.070 19 C -0.182 4.182 20 C -0.176 4.176 21 H 0.283 0.717 22 H 0.102 0.898 23 H 0.094 0.906 24 H 0.124 0.876 25 H 0.181 0.819 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 -7.411 -2.072 7.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.480 4.480 8 H 0.102 0.898 9 C 0.127 3.873 10 C -0.225 4.225 11 C -0.073 4.073 12 C -0.237 4.237 13 C 0.043 3.957 14 C -0.211 4.211 15 O -0.115 6.115 16 C -0.125 4.125 17 C -0.128 4.128 18 C -0.088 4.088 19 C -0.219 4.219 20 C -0.213 4.213 21 H 0.094 0.906 22 H 0.120 0.880 23 H 0.112 0.888 24 H 0.142 0.858 25 H 0.198 0.802 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.886 -7.048 -2.179 7.614 hybrid contribution 0.241 0.555 0.105 0.614 sum -1.645 -6.493 -2.074 7.012 Atomic orbital electron populations 1.69869 1.07729 1.29528 1.33287 1.25990 0.94757 1.01623 0.92190 0.86224 0.80997 0.80645 0.78699 1.18214 1.19546 1.19857 1.19563 0.98356 0.91068 1.38976 0.89755 1.17273 0.90023 0.92206 0.87792 1.20786 1.03455 0.92656 1.05581 1.19713 0.94104 0.96914 0.96607 1.19153 1.02614 0.91500 1.10473 1.19701 0.87090 0.95877 0.93059 1.19978 1.01604 0.93707 1.05837 1.83896 1.43479 1.24305 1.59780 1.23055 1.02604 0.81101 1.05779 1.20045 0.98187 0.92381 1.02138 1.20204 0.95444 0.89331 1.03842 1.22969 1.03941 1.01065 0.93948 1.23017 1.00197 1.02779 0.95355 0.90584 0.88012 0.88809 0.85781 0.80245 0.87522 0.88982 0.88881 0.88949 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.15 10.97 55.55 0.61 -19.54 16 2 C 0.07 1.83 5.12 -17.34 -0.09 1.74 16 3 Si 0.91 18.20 29.60 -169.99 -5.03 13.17 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.45 -11.70 9.01 -37.90 -0.34 -12.04 16 8 H 0.08 2.06 7.91 -52.48 -0.42 1.65 16 9 C 0.13 3.47 5.57 -106.81 -0.60 2.88 16 10 C -0.21 -5.00 9.71 -39.30 -0.38 -5.38 16 11 C -0.05 -1.27 10.03 -39.71 -0.40 -1.67 16 12 C -0.24 -5.67 6.39 -104.88 -0.67 -6.34 16 13 C 0.09 2.31 7.38 -38.58 -0.28 2.02 16 14 C -0.19 -5.20 8.69 -38.74 -0.34 -5.54 16 15 O -0.21 -5.05 10.59 3.81 0.04 -5.01 16 16 C -0.06 -1.21 11.37 29.43 0.33 -0.87 16 17 C -0.13 -2.56 6.02 -102.70 -0.62 -3.18 16 18 C -0.07 -1.12 6.32 -91.77 -0.58 -1.70 16 19 C -0.18 -2.29 10.02 -26.73 -0.27 -2.56 16 20 C -0.18 -2.35 10.23 -26.73 -0.27 -2.63 16 21 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 22 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 23 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 24 H 0.12 3.50 6.17 -52.49 -0.32 3.17 16 25 H 0.18 2.74 7.12 -52.49 -0.37 2.36 16 26 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 27 H 0.09 1.10 6.98 -51.93 -0.36 0.74 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 263.48 15.07 3.97 3.97 Total: -1.00 -28.46 263.48 -8.06 -36.52 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -3.15 Total: 6.16 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: -4.50 Total: -35.27 kcal Atomic # 7 Polarization: -20.15 SS G_CDS: 0.61 Total: -19.54 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: 0.04 Total: -5.01 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.46 -8.06 -36.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495172.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.663 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds