Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48502 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47329 * 300.00230 * 3 2 1 6 6 H 1.48501 * 109.47148 * 60.00478 * 3 2 1 7 7 C 1.39910 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00081 * 198.06037 * 7 2 1 9 9 C 1.41017 * 119.99913 * 18.05747 * 7 2 1 10 10 C 1.41215 * 119.92517 * 204.94234 * 9 7 2 11 11 C 1.35881 * 120.17569 * 180.29461 * 10 9 7 12 12 C 1.40154 * 120.03956 * 359.46507 * 11 10 9 13 13 C 1.41043 * 120.51603 * 0.53566 * 12 11 10 14 14 C 1.38071 * 119.48750 * 359.73595 * 13 12 11 15 15 O 1.34961 * 107.27206 * 179.70168 * 13 12 11 16 16 C 1.34325 * 110.82546 * 0.02562 * 15 13 12 17 17 C 1.34558 * 110.16770 * 359.97438 * 16 15 13 18 18 C 1.50696 * 126.87152 * 180.02562 * 17 16 15 19 19 C 1.52995 * 117.50293 * 8.58992 * 18 17 16 20 20 C 1.52999 * 60.00301 * 252.51297 * 19 18 17 21 21 H 0.97001 * 119.99897 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.91138 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.97831 * 179.70176 * 11 10 9 24 24 H 1.07997 * 120.18897 * 180.02562 * 14 13 12 25 25 H 1.08001 * 124.91080 * 179.97438 * 16 15 13 26 26 H 1.08996 * 115.55090 * 154.30629 * 18 17 16 27 27 H 1.09002 * 117.49451 * 0.02562 * 19 18 17 28 28 H 1.09003 * 117.50418 * 145.01856 * 19 18 17 29 29 H 1.08992 * 117.49845 * 252.50521 * 20 19 18 30 30 H 1.09000 * 117.49499 * 107.48246 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3463 -0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8840 2.3964 1.2126 7 6 2.0082 -1.2117 -0.0005 8 1 3.0483 -1.2349 0.2894 9 6 1.3552 -2.4026 -0.3796 10 6 1.8277 -3.6465 0.0934 11 6 1.2060 -4.7976 -0.2735 12 6 0.0857 -4.7527 -1.1145 13 6 -0.3994 -3.5190 -1.5959 14 6 0.2350 -2.3491 -1.2282 15 8 -1.4677 -3.7855 -2.3764 16 6 -1.7028 -5.1070 -2.4290 17 6 -0.7981 -5.7692 -1.6850 18 6 -0.7123 -7.2597 -1.4806 19 6 -1.6210 -8.1438 -2.3372 20 6 -1.9187 -7.9566 -0.8482 21 1 -0.4850 0.8401 0.0004 22 1 2.6882 -3.6831 0.7450 23 1 1.5731 -5.7475 0.0863 24 1 -0.1271 -1.3981 -1.5899 25 1 -2.5023 -5.5707 -2.9877 26 1 0.2773 -7.6443 -1.2341 27 1 -2.2805 -7.6472 -3.0489 28 1 -1.2292 -9.1101 -2.6546 29 1 -1.7228 -8.7999 -0.1859 30 1 -2.7744 -7.3369 -0.5801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260495172.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = 21.671209 kcal Electronic energy + Delta-G solvation = -14791.279499 eV Core-core repulsion = 12324.407190 eV Total energy + Delta-G solvation = -2466.872309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.86517 -38.51427 -38.16626 -35.47652 -32.67478 -30.89037 -30.45547 -26.93568 -24.42590 -23.58253 -23.21461 -22.50505 -20.15885 -19.07620 -18.05793 -17.53889 -16.71055 -16.58528 -16.21069 -15.46355 -14.99729 -14.71569 -14.24889 -14.14457 -13.37982 -12.92682 -12.78357 -12.60689 -12.48390 -12.35004 -12.26477 -11.89093 -11.86115 -11.49986 -11.15592 -11.00824 -10.11477 -9.27084 -8.75617 -8.70006 -6.39715 0.50219 0.95946 1.37367 1.41518 1.55340 1.72817 2.17921 2.34219 2.65623 3.12908 3.59566 3.73299 3.91832 4.09024 4.19164 4.31311 4.42935 4.73176 4.80480 4.84579 4.93119 5.01746 5.10767 5.20168 5.25583 5.30337 5.39546 5.72467 5.77738 5.90103 6.03880 6.09673 6.34683 6.68894 6.82150 6.90000 8.24921 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.057640 B = 0.006391 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.656756 B = 4380.381611 C = 4707.214222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.031 3.969 3 Si 0.989 3.011 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.482 4.482 8 H 0.092 0.908 9 C 0.103 3.897 10 C -0.220 4.220 11 C -0.052 4.052 12 C -0.252 4.252 13 C 0.060 3.940 14 C -0.221 4.221 15 O -0.230 6.230 16 C -0.064 4.064 17 C -0.126 4.126 18 C -0.103 4.103 19 C -0.157 4.157 20 C -0.167 4.167 21 H 0.291 0.709 22 H 0.120 0.880 23 H 0.128 0.872 24 H 0.101 0.899 25 H 0.228 0.772 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -9.167 -2.241 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.510 4.510 8 H 0.110 0.890 9 C 0.100 3.900 10 C -0.239 4.239 11 C -0.070 4.070 12 C -0.254 4.254 13 C 0.014 3.986 14 C -0.241 4.241 15 O -0.134 6.134 16 C -0.126 4.126 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.194 4.194 20 C -0.204 4.204 21 H 0.101 0.899 22 H 0.138 0.862 23 H 0.146 0.854 24 H 0.119 0.881 25 H 0.244 0.756 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.923 -8.831 -2.347 9.337 hybrid contribution 0.152 0.952 0.124 0.972 sum -1.771 -7.879 -2.223 8.376 Atomic orbital electron populations 1.69942 1.09516 1.30939 1.33922 1.26957 0.95437 1.05163 0.90935 0.85052 0.79622 0.75465 0.78949 1.17385 1.19148 1.18776 1.19886 0.98885 0.91962 1.40308 0.89026 1.17657 0.90377 0.93765 0.88227 1.21034 1.04323 0.92377 1.06129 1.20077 0.93394 0.97949 0.95628 1.19706 1.03231 0.92129 1.10311 1.19894 0.88088 0.96496 0.94104 1.19902 1.03149 0.93468 1.07622 1.83873 1.43022 1.26847 1.59662 1.23988 1.03542 0.79444 1.05663 1.20457 0.96810 0.94398 1.01058 1.20254 0.97005 0.86863 1.07974 1.23126 1.01667 1.01019 0.93540 1.23108 0.98069 1.02550 0.96706 0.89869 0.86176 0.85384 0.88109 0.75618 0.87165 0.88142 0.86300 0.86774 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.08 10.97 21.82 0.24 -43.85 16 2 C 0.03 1.58 5.12 85.24 0.44 2.02 16 3 Si 0.99 37.80 29.60 68.60 2.03 39.83 16 4 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 7 C -0.48 -25.89 9.01 23.36 0.21 -25.68 16 8 H 0.09 4.59 7.91 -2.91 -0.02 4.57 16 9 C 0.10 5.72 5.57 -21.28 -0.12 5.60 16 10 C -0.22 -10.87 9.71 22.45 0.22 -10.65 16 11 C -0.05 -2.41 10.03 22.19 0.22 -2.18 16 12 C -0.25 -12.18 6.39 -20.03 -0.13 -12.31 16 13 C 0.06 3.26 7.38 22.92 0.17 3.43 16 14 C -0.22 -12.75 8.69 22.81 0.20 -12.55 16 15 O -0.23 -11.20 10.59 -9.27 -0.10 -11.30 16 16 C -0.06 -2.42 11.37 66.98 0.76 -1.66 16 17 C -0.13 -4.92 6.02 -18.62 -0.11 -5.04 16 18 C -0.10 -2.97 6.32 -11.54 -0.07 -3.04 16 19 C -0.16 -3.23 10.02 30.59 0.31 -2.92 16 20 C -0.17 -3.83 10.23 30.60 0.31 -3.52 16 21 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 22 H 0.12 5.31 8.06 -2.91 -0.02 5.29 16 23 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 24 H 0.10 6.12 6.17 -2.91 -0.02 6.10 16 25 H 0.23 6.13 7.12 -2.91 -0.02 6.11 16 26 H 0.11 3.08 8.14 -2.39 -0.02 3.07 16 27 H 0.10 1.91 6.98 -2.39 -0.02 1.89 16 28 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -64.85 263.48 5.72 -59.12 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 1.15 Total: 24.70 kcal Atomic # 6 Polarization: -70.91 SS G_CDS: 2.40 Total: -68.51 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.24 Total: -43.85 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.10 Total: -11.30 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -64.85 5.72 -59.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495172.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.792 kcal (2) G-P(sol) polarization free energy of solvation -64.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds