Wall clock time and date at job start Mon Mar 30 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36491 * 125.63864 * 2 1 4 4 C 1.34819 * 108.22397 * 180.16511 * 3 2 1 5 5 C 1.50698 * 126.28508 * 179.84299 * 4 3 2 6 6 H 1.09001 * 109.47122 * 339.71533 * 5 4 3 7 7 N 1.46906 * 109.47167 * 219.71322 * 5 4 3 8 8 C 1.52997 * 109.47342 * 99.71423 * 5 4 3 9 9 C 1.50706 * 109.47267 * 185.00359 * 8 5 4 10 10 H 1.08007 * 119.99917 * 359.97438 * 9 8 5 11 11 C 1.37873 * 119.99976 * 179.97438 * 9 8 5 12 12 N 1.31517 * 119.99883 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 120.00407 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47532 * 89.99819 * 13 11 9 15 15 H 1.48504 * 109.47143 * 210.00258 * 13 11 9 16 16 H 1.48502 * 109.46723 * 329.99894 * 13 11 9 17 17 C 1.40932 * 107.43425 * 359.57547 * 4 3 2 18 18 C 1.34968 * 107.41731 * 0.26732 * 17 4 3 19 19 Cl 1.73596 * 125.89633 * 180.02562 * 18 17 4 20 20 H 1.09005 * 109.47514 * 270.28158 * 1 2 3 21 21 H 1.08998 * 109.47518 * 30.28237 * 1 2 3 22 22 H 1.08994 * 109.47258 * 150.28315 * 1 2 3 23 23 H 1.07994 * 125.89057 * 0.02562 * 3 2 1 24 24 H 1.00896 * 111.00309 * 299.99562 * 7 5 4 25 25 H 1.00902 * 110.99923 * 63.95725 * 7 5 4 26 26 H 1.09000 * 109.47278 * 304.99798 * 8 5 4 27 27 H 1.08994 * 109.47510 * 65.00307 * 8 5 4 28 28 H 0.96993 * 120.00379 * 180.02562 * 12 11 9 29 29 H 1.07997 * 126.28964 * 180.23830 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2603 1.1093 0.0000 4 6 3.5466 0.7058 -0.0037 5 6 4.7611 1.5979 -0.0084 6 1 4.4822 2.5896 -0.3647 7 7 5.7838 1.0284 -0.8960 8 6 5.3208 1.7051 1.4115 9 6 6.4592 2.6925 1.4297 10 1 6.7543 3.1932 0.5193 11 6 7.1239 2.9566 2.6084 12 7 8.1177 3.8179 2.6241 13 14 6.6131 2.0912 4.1830 14 1 7.3791 0.8268 4.3239 15 1 6.8935 2.9720 5.3452 16 1 5.1605 1.7868 4.1316 17 6 3.5472 -0.7035 0.0039 18 6 2.2595 -1.1080 0.0059 19 17 1.7099 -2.7546 0.0154 20 1 -0.3634 0.0051 1.0277 21 1 -0.3634 0.8874 -0.5182 22 1 -0.3633 -0.8925 -0.5094 23 1 1.9181 2.1336 0.0004 24 1 6.0594 0.1084 -0.5867 25 1 5.4615 1.0070 -1.8520 26 1 4.5353 2.0439 2.0871 27 1 5.6816 0.7286 1.7345 28 1 8.5856 4.0035 3.4531 29 1 4.4179 -1.3424 0.0070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260514110.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:12 Heat of formation + Delta-G solvation = 40.402133 kcal Electronic energy + Delta-G solvation = -13513.132913 eV Core-core repulsion = 11076.932739 eV Total energy + Delta-G solvation = -2436.200174 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.12816 -36.67997 -35.64344 -32.61487 -31.80352 -28.92112 -28.32666 -26.44729 -23.73464 -20.94922 -20.13991 -19.01888 -17.26012 -16.30805 -15.49125 -15.12990 -14.46526 -14.07136 -13.55519 -13.33165 -13.02573 -12.86718 -12.53751 -12.25214 -11.96716 -11.62273 -11.37480 -11.21069 -10.76996 -10.12921 -10.04308 -9.67046 -8.99951 -8.39114 -8.36706 -7.91563 -7.74885 -5.85315 -3.79297 1.79890 2.14980 3.04712 3.09064 3.41477 3.48335 3.52798 4.60287 4.60922 4.96932 5.17208 5.21513 5.41659 5.54812 5.59183 5.71290 6.08572 6.21789 6.48837 6.76689 6.94261 7.11631 7.27902 7.29343 7.49117 7.93170 8.12104 8.30321 8.78349 9.27932 9.78008 11.28717 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.035497 B = 0.006695 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.606516 B = 4181.110388 C = 4325.158991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.450 5.450 3 C 0.001 3.999 4 C -0.173 4.173 5 C 0.174 3.826 6 H 0.078 0.922 7 N -0.818 5.818 8 C 0.001 3.999 9 C -0.492 4.492 10 H 0.080 0.920 11 C 0.061 3.939 12 N -0.909 5.909 13 Si 0.873 3.127 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.268 1.268 17 C -0.160 4.160 18 C 0.048 3.952 19 Cl -0.038 7.038 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.170 0.830 24 H 0.333 0.667 25 H 0.323 0.677 26 H 0.017 0.983 27 H 0.010 0.990 28 H 0.259 0.741 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.511 -10.167 -6.089 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.130 5.130 3 C -0.128 4.128 4 C -0.182 4.182 5 C 0.061 3.939 6 H 0.096 0.904 7 N -0.343 5.343 8 C -0.037 4.037 9 C -0.530 4.530 10 H 0.098 0.902 11 C -0.138 4.138 12 N -0.550 5.550 13 Si 0.701 3.299 14 H -0.206 1.206 15 H -0.217 1.217 16 H -0.193 1.193 17 C -0.187 4.187 18 C -0.088 4.088 19 Cl -0.009 7.009 20 H 0.091 0.909 21 H 0.105 0.895 22 H 0.099 0.901 23 H 0.187 0.813 24 H 0.145 0.855 25 H 0.133 0.867 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.348 -9.604 -5.741 19.811 hybrid contribution -1.143 -1.456 0.859 2.040 sum -17.491 -11.059 -4.882 21.262 Atomic orbital electron populations 1.22009 0.77401 1.04281 1.03346 1.43886 1.06079 1.04878 1.58132 1.21767 0.89782 0.90619 1.10641 1.21096 0.96094 0.94158 1.06822 1.19927 0.83987 0.94014 0.95943 0.90406 1.58855 1.42008 1.29217 1.04258 1.19590 0.96429 0.97071 0.90591 1.21106 1.13513 1.22040 0.96321 0.90208 1.25002 0.95047 0.95184 0.98593 1.69915 1.22658 1.35405 1.26990 0.86889 0.79478 0.79691 0.83823 1.20554 1.21720 1.19304 1.20541 0.93601 0.95129 1.09436 1.20697 0.90201 0.80625 1.17281 1.98340 1.90583 1.14321 1.97703 0.90897 0.89515 0.90101 0.81292 0.85495 0.86651 0.96508 0.97163 0.93108 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 10.95 59.84 0.66 1.28 15 2 N -0.45 -5.92 3.15 -121.00 -0.38 -6.31 15 3 C 0.00 0.02 11.35 -16.69 -0.19 -0.17 15 4 C -0.17 -2.94 5.11 -104.82 -0.54 -3.48 15 5 C 0.17 3.44 3.14 -68.86 -0.22 3.22 15 6 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 7 N -0.82 -15.32 8.86 -5.65 -0.05 -15.37 15 8 C 0.00 0.02 3.67 -27.88 -0.10 -0.08 15 9 C -0.49 -14.22 9.39 -34.44 -0.32 -14.54 15 10 H 0.08 2.52 7.99 -52.48 -0.42 2.10 15 11 C 0.06 1.82 5.47 -17.82 -0.10 1.73 15 12 N -0.91 -28.80 13.96 55.43 0.77 -28.03 15 13 Si 0.87 22.44 27.47 -169.99 -4.67 17.77 15 14 H -0.28 -7.11 7.11 56.52 0.40 -6.71 15 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 15 16 H -0.27 -6.68 6.54 56.52 0.37 -6.31 15 17 C -0.16 -2.57 10.22 -39.72 -0.41 -2.98 15 18 C 0.05 0.69 7.41 -16.71 -0.12 0.57 15 19 Cl -0.04 -0.46 28.73 -51.86 -1.49 -1.95 15 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.09 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.08 0.62 7.78 -51.93 -0.40 0.22 15 23 H 0.17 2.08 8.06 -52.49 -0.42 1.66 15 24 H 0.33 5.95 8.25 -39.29 -0.32 5.62 15 25 H 0.32 5.16 9.06 -39.29 -0.36 4.80 15 26 H 0.02 0.41 7.20 -51.93 -0.37 0.04 15 27 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 15 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 29 H 0.14 2.16 7.73 -52.49 -0.41 1.75 15 LS Contribution 266.01 15.07 4.01 4.01 Total: -1.00 -32.78 266.01 -6.68 -39.46 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -3.53 Total: 4.87 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.34 Total: -14.46 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.34 Total: -49.71 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.49 Total: -1.95 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.78 -6.68 -39.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514110.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.866 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds