Wall clock time and date at job start Mon Mar 30 2020 03:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99947 * 2 1 4 4 H 1.48504 * 109.47341 * 89.99555 * 3 2 1 5 5 H 1.48497 * 109.47071 * 209.99781 * 3 2 1 6 6 H 1.48508 * 109.47130 * 329.99803 * 3 2 1 7 7 C 1.37870 * 119.99941 * 179.72174 * 2 1 3 8 8 H 1.08004 * 120.00136 * 344.07411 * 7 2 1 9 9 C 1.50695 * 120.00103 * 164.07540 * 7 2 1 10 10 H 1.09004 * 109.47439 * 54.47395 * 9 7 2 11 11 N 1.46897 * 109.47215 * 294.47359 * 9 7 2 12 12 C 1.50706 * 109.47411 * 174.47509 * 9 7 2 13 13 C 1.38228 * 119.61620 * 125.00066 * 12 9 7 14 14 C 1.38629 * 119.15901 * 179.97438 * 13 12 9 15 15 C 1.38680 * 118.41699 * 359.97438 * 14 13 12 16 16 C 1.38177 * 119.16820 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.62127 * 179.97438 * 16 15 14 18 18 F 1.39896 * 109.47417 * 300.00568 * 17 16 15 19 19 F 1.39909 * 109.46760 * 60.00084 * 17 16 15 20 20 N 1.31851 * 119.61501 * 304.72718 * 12 9 7 21 21 H 0.97000 * 119.99673 * 177.01571 * 1 2 3 22 22 H 1.00901 * 110.99966 * 301.73492 * 11 9 7 23 23 H 1.00901 * 111.00063 * 65.68434 * 11 9 7 24 24 H 1.07995 * 120.42041 * 359.97438 * 13 12 9 25 25 H 1.07991 * 120.79258 * 180.02562 * 14 13 12 26 26 H 1.07999 * 120.41379 * 179.97438 * 15 14 13 27 27 H 1.08994 * 109.47221 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5468 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0058 8 1 1.4956 -2.1101 0.2669 9 6 3.4681 -1.2208 -0.3521 10 1 4.0099 -0.5176 0.2805 11 7 3.6347 -0.8405 -1.7612 12 6 4.0121 -2.6101 -0.1392 13 6 4.6495 -3.2609 -1.1789 14 6 5.1467 -4.5384 -0.9724 15 6 4.9839 -5.1158 0.2779 16 6 4.3357 -4.4041 1.2692 17 6 4.1526 -5.0220 2.6314 18 9 3.4082 -6.2004 2.5128 19 9 5.4048 -5.3149 3.1826 20 7 3.8792 -3.1884 1.0382 21 1 -0.4850 -0.8389 -0.0437 22 1 3.1184 -1.4609 -2.3667 23 1 3.3632 0.1197 -1.9111 24 1 4.7587 -2.7803 -2.1398 25 1 5.6495 -5.0709 -1.7660 26 1 5.3583 -6.1096 0.4741 27 1 3.6254 -4.3223 3.2799 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260560626.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:26 Heat of formation + Delta-G solvation = -87.903906 kcal Electronic energy + Delta-G solvation = -15436.895950 eV Core-core repulsion = 12443.335329 eV Total energy + Delta-G solvation = -2993.560622 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.13378 -48.11602 -41.28040 -36.97884 -34.17028 -33.65365 -32.13463 -28.05289 -27.66548 -25.18165 -23.36396 -21.89417 -19.89261 -18.74347 -18.43367 -18.36934 -17.60309 -16.73652 -16.46256 -15.60698 -15.22178 -14.99844 -14.92018 -14.59735 -14.50392 -14.26160 -14.00079 -13.85587 -13.17254 -12.82295 -12.49900 -12.13221 -11.82905 -11.39980 -10.89061 -10.67969 -10.43840 -10.03228 -9.55474 -8.72072 -6.46935 -0.03495 0.30750 1.46460 1.51749 1.69769 2.29939 2.43894 2.66736 3.00807 3.08544 3.41152 3.70278 3.95729 4.00757 4.04975 4.22203 4.38549 4.56312 4.61414 5.03058 5.17207 5.18851 5.60199 5.74697 5.94578 6.34086 6.46700 6.74467 7.01321 7.33012 8.54974 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.008039 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.860569 B = 3482.173644 C = 3873.040498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.017 4.017 3 Si 1.088 2.912 4 H -0.280 1.280 5 H -0.231 1.231 6 H -0.282 1.282 7 C -0.612 4.612 8 H 0.011 0.989 9 C 0.227 3.773 10 H 0.051 0.949 11 N -0.835 5.835 12 C 0.143 3.857 13 C -0.145 4.145 14 C -0.071 4.071 15 C -0.153 4.153 16 C 0.022 3.978 17 C 0.331 3.669 18 F -0.199 7.199 19 F -0.195 7.195 20 N -0.485 5.485 21 H 0.251 0.749 22 H 0.334 0.666 23 H 0.337 0.663 24 H 0.165 0.835 25 H 0.181 0.819 26 H 0.160 0.840 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.080 -7.927 -1.333 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.216 4.216 3 Si 0.909 3.091 4 H -0.207 1.207 5 H -0.155 1.155 6 H -0.208 1.208 7 C -0.652 4.652 8 H 0.029 0.971 9 C 0.116 3.884 10 H 0.069 0.931 11 N -0.366 5.366 12 C 0.004 3.996 13 C -0.165 4.165 14 C -0.097 4.097 15 C -0.173 4.173 16 C -0.117 4.117 17 C 0.277 3.723 18 F -0.180 7.180 19 F -0.176 7.176 20 N -0.195 5.195 21 H 0.060 0.940 22 H 0.146 0.854 23 H 0.151 0.849 24 H 0.183 0.817 25 H 0.199 0.801 26 H 0.178 0.822 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.264 -6.042 -0.491 13.680 hybrid contribution -1.242 -2.248 -0.201 2.577 sum 11.022 -8.290 -0.692 13.809 Atomic orbital electron populations 1.70946 1.08372 1.29441 1.47860 1.27320 0.96112 1.06269 0.91944 0.83507 0.75904 0.71359 0.78368 1.20651 1.15483 1.20771 1.22551 0.95861 0.94893 1.51887 0.97101 1.17920 0.92932 0.88862 0.88671 0.93132 1.59605 1.63465 1.07914 1.05650 1.21432 0.92832 0.96945 0.88354 1.22438 0.97060 0.95661 1.01359 1.22058 0.96294 0.94075 0.97253 1.22112 0.99385 1.01901 0.93925 1.21702 1.00308 0.92716 0.96998 1.20028 0.77316 0.82974 0.92011 1.92986 1.76707 1.51371 1.96981 1.92994 1.43849 1.94376 1.86369 1.66873 1.16971 1.10238 1.25443 0.93972 0.85420 0.84855 0.81712 0.80128 0.82210 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.70 21.45 0.29 -56.86 15 2 C -0.02 -0.97 5.42 84.65 0.46 -0.51 15 3 Si 1.09 47.21 26.48 68.60 1.82 49.02 15 4 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 5 H -0.23 -8.53 5.56 99.48 0.55 -7.97 15 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 15 7 C -0.61 -34.02 8.80 25.60 0.23 -33.79 15 8 H 0.01 0.68 7.98 -2.91 -0.02 0.66 15 9 C 0.23 10.37 2.66 43.42 0.12 10.48 15 10 H 0.05 2.37 6.74 -2.39 -0.02 2.36 15 11 N -0.84 -32.12 7.88 -174.95 -1.38 -33.50 15 12 C 0.14 5.98 6.11 42.56 0.26 6.24 15 13 C -0.15 -4.76 9.22 22.36 0.21 -4.55 15 14 C -0.07 -1.86 10.18 22.47 0.23 -1.63 15 15 C -0.15 -4.34 9.63 22.36 0.22 -4.13 15 16 C 0.02 0.76 6.28 42.53 0.27 1.03 15 17 C 0.33 9.98 5.54 71.23 0.39 10.37 15 18 F -0.20 -6.06 17.25 44.97 0.78 -5.28 15 19 F -0.19 -5.55 17.25 44.97 0.78 -4.77 15 20 N -0.49 -20.78 9.91 -172.08 -1.70 -22.49 15 21 H 0.25 15.88 8.72 -92.71 -0.81 15.08 15 22 H 0.33 12.41 8.35 -89.69 -0.75 11.66 15 23 H 0.34 12.77 5.76 -89.69 -0.52 12.26 15 24 H 0.17 4.76 6.68 -2.91 -0.02 4.74 15 25 H 0.18 2.96 8.06 -2.91 -0.02 2.94 15 26 H 0.16 3.51 8.06 -2.91 -0.02 3.48 15 27 H 0.14 3.89 8.11 -2.39 -0.02 3.87 15 Total: -1.00 -66.78 244.53 2.72 -64.07 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.23 Total: 26.29 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 2.37 Total: -16.49 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -2.79 Total: -112.85 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 1.55 Total: -10.05 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.82 Total: 49.02 kcal Total: -66.78 2.72 -64.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260560626.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.839 kcal (2) G-P(sol) polarization free energy of solvation -66.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds